Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    306:357 308:356 309:355 310:354 311:353 312:352
	Energy of Broken Structure: -121.2
	Energy of Pseudo-Helices:   -8.8
	Pseudoknot Energy Penalty:  8.0
	Total Free Energy:          -122.0
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -5.7
		Stack = -1.4  for stack of 358-506
	Helix total = -1.4
	Multiloop = 8.0  for closure of 359-505
		Stack = -2.1  for stack of 435-484
		Stack = -2.5  for stack of 436-483
		Stack = -1.5  for stack of 437-482
		Stack = -1.4  for stack of 438-481
	Helix total = -7.5
	Internal/bulge = 4.3  for closure of 439-480	Size = 15
		Stack = -1.4  for stack of 447-471
		Stack = -3.4  for stack of 448-470
		Stack = -2.4  for stack of 449-469
		Stack = -1.5  for stack of 450-468
		Stack = -2.1  for stack of 451-467
		Stack = -2.2  for stack of 452-466
	Helix total = -13.0
	Hairpin = 5.1  for closure of 453-465
		Stack = -0.6  for stack of 378-434
		Stack = -2.4  for stack of 379-433
		Stack = -3.3  for stack of 380-432
		Stack = -1.4  for stack of 381-431
		Stack = -2.1  for stack of 382-430
		Stack = -3.3  for stack of 383-429
		Stack = -2.5  for stack of 384-428
	Helix total = -15.6
	Internal/bulge = 4.2  for closure of 385-427	Size = 15
		Stack = -3.3  for stack of 394-419
		Stack = -2.2  for stack of 395-418
		Stack = -2.1  for stack of 396-417
	Helix total = -7.6
	Internal/bulge = 0.5  for closure of 397-416	Size = 1 BP stack across bulge = -3.3
		Stack = -3.4  for stack of 399-415
		Stack = -3.3  for stack of 400-414
	Helix total = -6.7
	Hairpin = 4.2  for closure of 401-413
		Stack = -2.1  for stack of 362-377
		Stack = -2.4  for stack of 363-376
		Stack = -2.1  for stack of 364-375
		Stack = -2.1  for stack of 365-374
		Stack = -2.5  for stack of 366-373
	Helix total = -11.2
	Hairpin = 4.7  for closure of 367-372
		Stack = -2.5  for stack of 324-343
		Stack = -0.5  for stack of 325-342
		Stack = -1.5  for stack of 326-341
		Stack = -2.4  for stack of 327-340
		Stack = -3.4  for stack of 328-339
		Stack = -2.1  for stack of 329-338
		Stack = -2.2  for stack of 330-337
	Helix total = -14.6
	Hairpin = 3.5  for closure of 331-336
		Stack = -1.5  for stack of 124-322
		Stack = -2.1  for stack of 125-321
		Stack = -0.9  for stack of 126-320
		Stack = -2.4  for stack of 127-319
		Stack = -2.1  for stack of 128-318
		Stack = -1.5  for stack of 129-317
	Helix total = -10.5
	Multiloop = 8.8  for closure of 130-316
		Stack = -2.5  for stack of 260-302
	Helix total = -2.5
	Internal/bulge = 1.9  for closure of 261-301	Size = 7
		Stack = -2.1  for stack of 266-297
		Stack = -2.4  for stack of 267-296
		Stack = -3.3  for stack of 268-295
	Helix total = -7.8
	Internal/bulge = 1.0  for closure of 269-294	Size = 6
		Stack = -3.4  for stack of 273-290
		Stack = -1.4  for stack of 274-289
		Stack = -2.5  for stack of 275-288
	Helix total = -7.3
	Hairpin = 5.0  for closure of 276-287
		Stack = -2.1  for stack of 135-259
		Stack = -3.4  for stack of 136-258
		Stack = -2.4  for stack of 137-257
		Stack = -3.3  for stack of 138-256
		Stack = -1.5  for stack of 139-255
	Helix total = -12.7
	Internal/bulge = 4.4  for closure of 140-254	Size = 10
		Stack = -3.4  for stack of 147-249
		Stack = -2.1  for stack of 148-248
	Helix total = -5.5
	Internal/bulge = 4.5  for closure of 149-247	Size = 13
		Stack = -3.3  for stack of 158-241
		Stack = -2.4  for stack of 159-240
	Helix total = -5.7
	Internal/bulge = 1.4  for closure of 160-239	Size = 1 BP stack across bulge = -2.4
		Stack = -0.9  for stack of 162-238
		Stack = -0.9  for stack of 163-237
		Stack = -2.1  for stack of 164-236
		Stack = -2.4  for stack of 165-235
	Helix total = -6.3
	Internal/bulge = 1.6  for closure of 166-234	Size = 1 BP stack across bulge = -2.2
	Helix total = 0.0
	Internal/bulge = 4.1  for closure of 167-232	Size = 4
		Stack = -2.2  for stack of 168-227
		Stack = -3.3  for stack of 169-226
	Helix total = -5.5
	Multiloop = 7.6  for closure of 170-225
		Stack = -2.1  for stack of 202-220
		Stack = -3.4  for stack of 203-219
		Stack = -1.4  for stack of 204-218
		Stack = -2.1  for stack of 205-217
		Stack = -3.3  for stack of 206-216
		Stack = -3.3  for stack of 207-215
		Stack = -2.2  for stack of 208-214
	Helix total = -17.8
	Hairpin = 5.9  for closure of 209-213
		Stack = -2.5  for stack of 174-195
		Stack = -2.1  for stack of 175-194
	Helix total = -4.6
	Internal/bulge = 2.5  for closure of 176-193	Size = 1 BP stack across bulge = -1.3
		Stack = -0.6  for stack of 178-192
		Stack = -2.1  for stack of 179-191
		Stack = -2.2  for stack of 180-190
		Stack = -2.1  for stack of 181-189
	Helix total = -7.0
	Hairpin = 3.2  for closure of 182-188
		Stack = -3.4  for stack of 88-121
		Stack = -2.4  for stack of 89-120
		Stack = -3.3  for stack of 90-119
		Stack = -3.4  for stack of 91-118
	Helix total = -12.5
	Internal/bulge = -1.4  for closure of 92-117	Size = 2
		Stack = -1.3  for stack of 94-115
		Stack = -0.9  for stack of 95-114
		Stack = -2.2  for stack of 96-113
		Stack = -2.1  for stack of 97-112
		Stack = -1.4  for stack of 98-111
		Stack = -1.5  for stack of 99-110
		Stack = -2.1  for stack of 100-109
	Helix total = -11.5
	Hairpin = 5.2  for closure of 101-108
		Stack = -2.1  for stack of 25-86
		Stack = -3.4  for stack of 26-85
		Stack = -2.1  for stack of 27-84
	Helix total = -7.6
	Multiloop = 9.5  for closure of 28-83
		Stack = -2.1  for stack of 43-78
		Stack = -3.3  for stack of 44-77
		Stack = -3.4  for stack of 45-76
		Stack = -1.4  for stack of 46-75
	Helix total = -10.2
	Hairpin = 7.4  for closure of 47-74
		Stack = -2.5  for stack of 29-42
		Stack = -3.3  for stack of 30-41
		Stack = -3.3  for stack of 31-40
	Helix total = -9.1
	Hairpin = 3.1  for closure of 32-39
		Stack = -0.9  for stack of 1-24
		Stack = -2.1  for stack of 2-23
		Stack = -3.3  for stack of 3-22
		Stack = -2.5  for stack of 4-21
		Stack = -0.6  for stack of 5-20
		Stack = -0.9  for stack of 6-19
	Helix total = -10.3
	Hairpin = 6.3  for closure of 7-18


	Total energy = -121.2



