Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    12:399 13:398 14:397 15:396 16:395 17:394 58:322 59:321
	    60:320 61:319 62:318 63:317 64:316
	Energy of Broken Structure: -176.6
	Energy of Pseudo-Helices:   -26.4
	Pseudoknot Energy Penalty:  17.4
	Total Free Energy:          -185.6
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -1.7
		Stack = -3.3  for stack of 1-430
		Stack = -3.4  for stack of 2-429
	Helix total = -6.7
	Internal/bulge = 0.9  for closure of 3-428	Size = 2
		Stack = -2.4  for stack of 5-426
		Stack = -2.1  for stack of 6-425
		Stack = -2.4  for stack of 7-424
		Stack = -2.1  for stack of 8-423
	Helix total = -9.0
	Internal/bulge = 0.1  for closure of 9-422	Size = 1 BP stack across bulge = -2.4
		Stack = -2.1  for stack of 10-420
	Helix total = -2.1
	Multiloop = 5.6  for closure of 11-419
		Stack = -0.9  for stack of 44-417
		Stack = -2.1  for stack of 45-416
	Helix total = -3.0
	Internal/bulge = 0.4  for closure of 46-415	Size = 1 BP stack across bulge = -3.4
		Stack = -3.3  for stack of 48-414
		Stack = -3.3  for stack of 49-413
		Stack = -3.3  for stack of 50-412
		Stack = -3.3  for stack of 51-411
	Helix total = -13.2
	Multiloop = 5.8  for closure of 52-410
		Stack = -2.2  for stack of 297-381
		Stack = -2.4  for stack of 298-380
		Stack = -3.3  for stack of 299-379
		Stack = -2.4  for stack of 300-378
		Stack = -3.4  for stack of 301-377
		Stack = -2.4  for stack of 302-376
	Helix total = -16.1
	Internal/bulge = 0.4  for closure of 303-375	Size = 1 BP stack across bulge = -3.4
		Stack = -3.3  for stack of 304-373
	Helix total = -3.3
	Multiloop = 5.3  for closure of 305-372
		Stack = -2.1  for stack of 350-369
		Stack = -2.4  for stack of 351-368
		Stack = -2.4  for stack of 352-367
		Stack = -3.3  for stack of 353-366
		Stack = -3.3  for stack of 354-365
		Stack = -3.3  for stack of 355-364
	Helix total = -16.8
	Hairpin = 3.2  for closure of 356-363
		Stack = -3.3  for stack of 324-349
		Stack = -3.4  for stack of 325-348
		Stack = -2.4  for stack of 326-347
		Stack = -3.4  for stack of 327-346
		Stack = -2.4  for stack of 328-345
	Helix total = -14.9
	Internal/bulge = -0.6  for closure of 329-344	Size = 2
		Stack = -2.4  for stack of 331-342
		Stack = -3.3  for stack of 332-341
		Stack = -3.3  for stack of 333-340
	Helix total = -9.0
	Hairpin = 4.5  for closure of 334-339
		Stack = -2.1  for stack of 53-293
		Stack = -2.2  for stack of 54-292
		Stack = -3.3  for stack of 55-291
	Helix total = -7.6
	Internal/bulge = 4.8  for closure of 56-290	Size = 9
		Stack = -3.3  for stack of 66-289
		Stack = -2.2  for stack of 67-288
		Stack = -2.1  for stack of 68-287
		Stack = -2.4  for stack of 69-286
	Helix total = -10.0
	Multiloop = 3.4  for closure of 70-285
		Stack = -3.3  for stack of 101-284
	Helix total = -3.3
	Internal/bulge = 6.8  for closure of 102-283	Size = 33
		Stack = -3.3  for stack of 122-268
		Stack = -2.4  for stack of 123-267
	Helix total = -5.7
	Internal/bulge = 2.8  for closure of 124-266	Size = 2
		Stack = -2.1  for stack of 125-263
		Stack = -2.4  for stack of 126-262
		Stack = -2.4  for stack of 127-261
		Stack = -2.4  for stack of 128-260
		Stack = -2.2  for stack of 129-259
		Stack = -3.3  for stack of 130-258
	Helix total = -14.8
	Internal/bulge = 2.8  for closure of 131-257	Size = 2
		Stack = -2.4  for stack of 132-254
	Helix total = -2.4
	Multiloop = 4.3  for closure of 133-253
		Stack = -2.4  for stack of 234-252
		Stack = -2.1  for stack of 235-251
		Stack = -1.5  for stack of 236-250
		Stack = -1.4  for stack of 237-249
		Stack = -2.1  for stack of 238-248
		Stack = -3.3  for stack of 239-247
		Stack = -3.4  for stack of 240-246
	Helix total = -16.2
	Hairpin = 5.4  for closure of 241-245
		Stack = -3.3  for stack of 135-231
	Helix total = -3.3
	Internal/bulge = 2.2  for closure of 136-230	Size = 8
		Stack = -2.1  for stack of 142-226
		Stack = -3.4  for stack of 143-225
		Stack = -2.4  for stack of 144-224
	Helix total = -7.9
	Multiloop = 4.4  for closure of 145-223
		Stack = -3.4  for stack of 191-217
	Helix total = -3.4
	Internal/bulge = 0.3  for closure of 192-216	Size = 5
		Stack = -3.3  for stack of 196-213
	Helix total = -3.3
	Internal/bulge = -0.2  for closure of 197-212	Size = 4
		Stack = -3.3  for stack of 200-209
		Stack = -3.3  for stack of 201-208
	Helix total = -6.6
	Hairpin = 3.3  for closure of 202-207
		Stack = -2.5  for stack of 170-190
		Stack = -2.4  for stack of 171-189
		Stack = -3.4  for stack of 172-188
		Stack = -2.4  for stack of 173-187
		Stack = -3.3  for stack of 174-186
		Stack = -3.4  for stack of 175-185
		Stack = -3.3  for stack of 176-184
		Stack = -2.4  for stack of 177-183
	Helix total = -23.1
	Hairpin = 5.4  for closure of 178-182
		Stack = -2.4  for stack of 146-169
	Helix total = -2.4
	Internal/bulge = 0.5  for closure of 147-168	Size = 1 BP stack across bulge = -3.3
		Stack = -3.4  for stack of 149-167
		Stack = -2.4  for stack of 150-166
		Stack = -2.4  for stack of 151-165
		Stack = -2.2  for stack of 152-164
		Stack = -2.4  for stack of 153-163
		Stack = -3.3  for stack of 154-162
		Stack = -3.4  for stack of 155-161
	Helix total = -19.5
	Hairpin = 5.4  for closure of 156-160
		Stack = -2.1  for stack of 87-100
		Stack = -2.5  for stack of 88-99
		Stack = -1.5  for stack of 89-98
		Stack = -2.4  for stack of 90-97
	Helix total = -8.5
	Hairpin = 3.1  for closure of 91-96
		Stack = -3.3  for stack of 71-86
		Stack = -2.4  for stack of 72-85
		Stack = -3.3  for stack of 73-84
		Stack = -3.3  for stack of 74-83
		Stack = -3.4  for stack of 75-82
	Helix total = -15.7
	Hairpin = 3.3  for closure of 76-81
		Stack = -1.4  for stack of 21-39
		Stack = -1.4  for stack of 22-38
		Stack = -2.1  for stack of 23-37
		Stack = -3.4  for stack of 24-36
		Stack = -3.3  for stack of 25-35
		Stack = -3.3  for stack of 26-34
	Helix total = -14.9
	Hairpin = 4.2  for closure of 27-33


	Total energy = -176.6



