Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    54:70 55:69 56:68 57:67
	Energy of Broken Structure: -3.8
	Energy of Pseudo-Helices:   -5.1
	Pseudoknot Energy Penalty:  7.2
	Total Free Energy:          -1.7
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -1.7
		Stack = -3.3  for stack of 1-326
		Stack = -1.5  for stack of 2-325
		Stack = -2.1  for stack of 3-324
		Stack = -3.4  for stack of 4-323
		Stack = -2.1  for stack of 5-322
		Stack = -2.1  for stack of 6-321
	Helix total = -14.5
	Multiloop = 5.6  for closure of 7-320
		Stack = -2.2  for stack of 303-319
		Stack = -2.1  for stack of 304-318
		Stack = -3.3  for stack of 305-317
		Stack = -3.3  for stack of 306-316
	Helix total = -10.9
	Hairpin = 4.4  for closure of 307-315
		Stack = -2.1  for stack of 20-299
		Stack = -1.1  for stack of 21-298
	Helix total = -3.2
	Internal/bulge = 3.4  for closure of 22-297	Size = 6
		Stack = -0.9  for stack of 26-293
	Helix total = -0.9
	Internal/bulge = 3.5  for closure of 27-292	Size = 12
	Helix total = 0.0
	Internal/bulge = -0.7  for closure of 34-285	Size = 2
	Helix total = 0.0
	Internal/bulge = 1.6  for closure of 36-283	Size = 2
	Helix total = 0.0
	Internal/bulge = 1.9  for closure of 38-281	Size = 2
		Stack = -1.1  for stack of 40-279
		Stack = -0.9  for stack of 41-278
	Helix total = -2.0
	Internal/bulge = 1.9  for closure of 42-277	Size = 2
	Helix total = 0.0
	Internal/bulge = 3.6  for closure of 44-275	Size = 11
		Stack = -0.9  for stack of 50-268
		Stack = -2.1  for stack of 51-267
		Stack = -2.2  for stack of 52-266
	Helix total = -5.2
	Internal/bulge = 10.0  for closure of 53-265	Size = 186
		Stack = -0.9  for stack of 59-83
		Stack = -1.3  for stack of 60-82
		Stack = -0.9  for stack of 61-81
		Stack = -1.1  for stack of 62-80
		Stack = -2.1  for stack of 63-79
	Helix total = -6.3
	Hairpin = 5.7  for closure of 64-78


	Total energy = -3.8



