Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    431:453 432:452 433:451
	Energy of Broken Structure: -136.7
	Energy of Pseudo-Helices:   -6.7
	Pseudoknot Energy Penalty:  7.2
	Total Free Energy:          -136.2
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -4.0
		Stack = -3.4  for stack of 22-483
		Stack = -2.4  for stack of 23-482
		Stack = -3.4  for stack of 24-481
		Stack = -2.4  for stack of 25-480
		Stack = -2.4  for stack of 26-479
		Stack = -2.2  for stack of 27-478
		Stack = -2.4  for stack of 28-477
		Stack = -3.4  for stack of 29-476
		Stack = -2.1  for stack of 30-475
	Helix total = -24.1
	Multiloop = 0.5  for closure of 31-474
		Stack = -3.4  for stack of 425-472
		Stack = -3.3  for stack of 426-471
		Stack = -2.4  for stack of 427-470
		Stack = -2.4  for stack of 428-469
		Stack = -2.1  for stack of 429-468
	Helix total = -13.6
	Internal/bulge = 4.7  for closure of 430-467	Size = 8
		Stack = -2.1  for stack of 439-466
		Stack = -2.1  for stack of 440-465
		Stack = -3.3  for stack of 441-464
	Helix total = -7.5
	Internal/bulge = 0.7  for closure of 442-463	Size = 2
	Helix total = 0.0
	Hairpin = 6.9  for closure of 444-461
		Stack = -3.3  for stack of 399-419
		Stack = -3.4  for stack of 400-418
		Stack = -2.4  for stack of 401-417
		Stack = -3.3  for stack of 402-416
		Stack = -3.3  for stack of 403-415
	Helix total = -15.7
	Hairpin = 5.7  for closure of 404-414
		Stack = -3.4  for stack of 389-396
	Helix total = -3.4
	Hairpin = 3.3  for closure of 390-395
		Stack = -2.4  for stack of 33-386
		Stack = -3.3  for stack of 34-385
		Stack = -3.3  for stack of 35-384
		Stack = -3.3  for stack of 36-383
	Helix total = -12.3
	Internal/bulge = 1.5  for closure of 37-382	Size = 5
	Helix total = 0.0
	Multiloop = 4.2  for closure of 40-378
		Stack = -2.1  for stack of 350-377
	Helix total = -2.1
	Internal/bulge = 1.3  for closure of 351-376	Size = 1 BP stack across bulge = -2.1
		Stack = -3.4  for stack of 353-375
		Stack = -3.3  for stack of 354-374
	Helix total = -6.7
	Internal/bulge = 3.0  for closure of 355-373	Size = 4
		Stack = -1.4  for stack of 359-371
		Stack = -3.4  for stack of 360-370
		Stack = -2.4  for stack of 361-369
		Stack = -3.4  for stack of 362-368
	Helix total = -10.6
	Hairpin = 5.4  for closure of 363-367
	Helix total = 0.0
	Internal/bulge = 4.4  for closure of 41-345	Size = 6
		Stack = -3.4  for stack of 47-343
		Stack = -3.3  for stack of 48-342
	Helix total = -6.7
	Internal/bulge = 1.7  for closure of 49-341	Size = 1 BP stack across bulge = -2.1
		Stack = -2.1  for stack of 51-340
		Stack = -3.4  for stack of 52-339
	Helix total = -5.5
	Multiloop = 0.1  for closure of 53-338
	Helix total = 0.0
	Internal/bulge = 1.2  for closure of 323-334	Size = 2
		Stack = -2.4  for stack of 325-332
	Helix total = -2.4
	Hairpin = 3.3  for closure of 326-331
		Stack = -3.4  for stack of 300-321
		Stack = -2.4  for stack of 301-320
		Stack = -3.3  for stack of 302-319
		Stack = -3.3  for stack of 303-318
		Stack = -3.4  for stack of 304-317
		Stack = -3.3  for stack of 305-316
	Helix total = -19.1
	Hairpin = 4.1  for closure of 306-315
		Stack = -2.1  for stack of 84-298
		Stack = -2.4  for stack of 85-297
	Helix total = -4.5
	Multiloop = 2.0  for closure of 86-296
		Stack = -2.4  for stack of 273-295
		Stack = -3.3  for stack of 274-294
		Stack = -2.4  for stack of 275-293
	Helix total = -8.1
	Internal/bulge = 3.7  for closure of 276-292	Size = 3
		Stack = -2.4  for stack of 277-288
		Stack = -0.9  for stack of 278-287
		Stack = -1.4  for stack of 279-286
	Helix total = -4.7
	Hairpin = 5.4  for closure of 280-285
		Stack = -3.3  for stack of 223-269
		Stack = -3.4  for stack of 224-268
	Helix total = -6.7
	Internal/bulge = 3.7  for closure of 225-267	Size = 10
		Stack = -3.3  for stack of 230-260
		Stack = -3.3  for stack of 231-259
	Helix total = -6.6
	Internal/bulge = 3.3  for closure of 232-258	Size = 2
		Stack = -2.4  for stack of 235-257
		Stack = -2.4  for stack of 236-256
		Stack = -3.3  for stack of 237-255
		Stack = -3.4  for stack of 238-254
		Stack = -2.4  for stack of 239-253
		Stack = -3.4  for stack of 240-252
		Stack = -2.4  for stack of 241-251
	Helix total = -19.7
	Hairpin = 3.8  for closure of 242-250
		Stack = -2.4  for stack of 94-221
		Stack = -3.3  for stack of 95-220
	Helix total = -5.7
	Internal/bulge = -0.6  for closure of 96-219	Size = 4
	Helix total = 0.0
	Internal/bulge = 2.3  for closure of 99-216	Size = 4
		Stack = -3.3  for stack of 103-214
	Helix total = -3.3
	Internal/bulge = 2.6  for closure of 104-213	Size = 5
		Stack = -3.4  for stack of 108-210
		Stack = -2.4  for stack of 109-209
		Stack = -3.3  for stack of 110-208
	Helix total = -9.1
	Internal/bulge = 7.5  for closure of 111-207	Size = 64
		Stack = -2.4  for stack of 126-156
	Helix total = -2.4
	Internal/bulge = 2.2  for closure of 127-155	Size = 11
		Stack = -2.4  for stack of 133-148
		Stack = -3.4  for stack of 134-147
		Stack = -2.1  for stack of 135-146
		Stack = -1.4  for stack of 136-145
		Stack = -3.3  for stack of 137-144
	Helix total = -12.6
	Hairpin = 4.9  for closure of 138-143
		Stack = -3.4  for stack of 56-77
	Helix total = -3.4
	Internal/bulge = -1.0  for closure of 57-76	Size = 1 BP stack across bulge = -3.3
		Stack = -2.4  for stack of 59-75
		Stack = -3.4  for stack of 60-74
	Helix total = -5.8
	Internal/bulge = 1.7  for closure of 61-73	Size = 1 BP stack across bulge = -2.1
		Stack = -2.4  for stack of 62-71
	Helix total = -2.4
	Hairpin = 4.0  for closure of 63-70
		Stack = -3.3  for stack of 4-20
		Stack = -2.4  for stack of 5-19
		Stack = -3.3  for stack of 6-18
		Stack = -2.5  for stack of 7-17
	Helix total = -11.5
	Hairpin = 6.0  for closure of 8-16


	Total energy = -136.7



