Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    48:68 49:67 50:66 51:65 52:64 173:207 175:205 176:204
	    178:202 220:256 221:255 222:254 223:253 224:252 225:251 226:250
	    273:309 274:308 275:307 276:306 277:305
	Energy of Broken Structure: -113.8
	Energy of Pseudo-Helices:   -33.6
	Pseudoknot Energy Penalty:  37.8
	Total Free Energy:          -109.6
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -1.7
		Stack = -3.3  for stack of 1-370
		Stack = -1.5  for stack of 2-369
		Stack = -2.1  for stack of 3-368
		Stack = -3.3  for stack of 4-367
		Stack = -2.2  for stack of 5-366
		Stack = -2.1  for stack of 6-365
	Helix total = -14.5
	Multiloop = 5.0  for closure of 7-364
		Stack = -3.4  for stack of 347-363
		Stack = -2.4  for stack of 348-362
		Stack = -3.3  for stack of 349-361
		Stack = -3.3  for stack of 350-360
	Helix total = -12.4
	Hairpin = 4.4  for closure of 351-359
		Stack = -2.1  for stack of 19-343
		Stack = -2.4  for stack of 20-342
		Stack = -3.3  for stack of 21-341
		Stack = -2.4  for stack of 22-340
		Stack = -3.3  for stack of 23-339
	Helix total = -13.5
	Internal/bulge = 0.5  for closure of 24-338	Size = 2
	Helix total = 0.0
	Internal/bulge = -1.4  for closure of 26-336	Size = 2
	Helix total = 0.0
	Internal/bulge = 2.4  for closure of 28-334	Size = 1 BP stack across bulge = -1.4
		Stack = -2.4  for stack of 30-333
	Helix total = -2.4
	Internal/bulge = -0.7  for closure of 31-332	Size = 2
		Stack = -2.5  for stack of 33-330
		Stack = -2.1  for stack of 34-329
		Stack = -2.1  for stack of 35-328
		Stack = -3.3  for stack of 36-327
		Stack = -3.3  for stack of 37-326
	Helix total = -13.3
	Internal/bulge = 1.7  for closure of 38-325	Size = 10
		Stack = -2.4  for stack of 43-318
		Stack = -3.3  for stack of 44-317
		Stack = -3.3  for stack of 45-316
		Stack = -3.4  for stack of 46-315
	Helix total = -12.4
	Multiloop = 4.2  for closure of 47-314
		Stack = -2.1  for stack of 257-292
		Stack = -3.4  for stack of 258-291
		Stack = -3.3  for stack of 259-290
		Stack = -2.1  for stack of 260-289
	Helix total = -10.9
	Internal/bulge = 2.5  for closure of 261-288	Size = 1 BP stack across bulge = -1.3
		Stack = -1.4  for stack of 263-287
		Stack = -2.2  for stack of 264-286
		Stack = -2.4  for stack of 265-285
		Stack = -2.4  for stack of 266-284
		Stack = -3.3  for stack of 267-283
	Helix total = -11.7
	Hairpin = 6.3  for closure of 268-282
		Stack = -3.3  for stack of 210-238
		Stack = -2.4  for stack of 211-237
		Stack = -1.5  for stack of 212-236
		Stack = -2.5  for stack of 213-235
		Stack = -2.1  for stack of 214-234
		Stack = -1.4  for stack of 215-233
		Stack = -2.4  for stack of 216-232
		Stack = -2.2  for stack of 217-231
		Stack = -3.3  for stack of 218-230
	Helix total = -21.1
	Hairpin = 5.4  for closure of 219-229
		Stack = -2.4  for stack of 158-194
		Stack = -2.2  for stack of 159-193
		Stack = -2.4  for stack of 160-192
		Stack = -2.1  for stack of 161-191
		Stack = -2.1  for stack of 162-190
	Helix total = -11.2
	Internal/bulge = 2.3  for closure of 163-189	Size = 4
		Stack = -2.1  for stack of 165-185
		Stack = -2.1  for stack of 166-184
		Stack = -3.3  for stack of 167-183
		Stack = -3.3  for stack of 168-182
	Helix total = -10.8
	Hairpin = 5.3  for closure of 169-181
		Stack = -2.1  for stack of 114-152
		Stack = -1.3  for stack of 115-151
	Helix total = -3.4
	Internal/bulge = 1.6  for closure of 116-150	Size = 4
		Stack = -3.3  for stack of 119-147
		Stack = -3.3  for stack of 120-146
	Helix total = -6.6
	Internal/bulge = 0.9  for closure of 121-145	Size = 2
		Stack = -2.1  for stack of 123-143
		Stack = -0.9  for stack of 124-142
		Stack = -1.3  for stack of 125-141
	Helix total = -4.3
	Internal/bulge = 1.2  for closure of 126-140	Size = 2
		Stack = -3.4  for stack of 128-138
		Stack = -2.4  for stack of 129-137
	Helix total = -5.8
	Hairpin = 5.0  for closure of 130-136
		Stack = -2.1  for stack of 54-83
		Stack = -2.4  for stack of 55-82
		Stack = -0.6  for stack of 56-81
		Stack = -2.5  for stack of 57-80
		Stack = -2.4  for stack of 58-79
	Helix total = -10.0
	Hairpin = 5.6  for closure of 59-78


	Total energy = -113.8



