Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    48:72 49:71 50:70 51:69 156:190 157:189 158:188 159:187
	    160:186 161:185 205:235 206:234 207:233 208:232 209:231 210:230
	    255:296 256:295 257:294 258:293 260:292 261:291 262:290
	Energy of Broken Structure: -80.7
	Energy of Pseudo-Helices:   -39.2
	Pseudoknot Energy Penalty:  32.5
	Total Free Energy:          -87.4
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -1.7
		Stack = -3.3  for stack of 1-357
		Stack = -1.5  for stack of 2-356
		Stack = -2.1  for stack of 3-355
		Stack = -3.3  for stack of 4-354
		Stack = -2.2  for stack of 5-353
		Stack = -2.1  for stack of 6-352
	Helix total = -14.5
	Multiloop = 6.5  for closure of 7-351
		Stack = -2.1  for stack of 334-350
		Stack = -3.3  for stack of 335-349
		Stack = -3.3  for stack of 336-348
		Stack = -3.3  for stack of 337-347
	Helix total = -12.0
	Hairpin = 4.4  for closure of 338-346
		Stack = -2.1  for stack of 20-330
		Stack = -0.6  for stack of 21-329
		Stack = -0.5  for stack of 22-328
		Stack = -0.5  for stack of 23-327
		Stack = -1.4  for stack of 24-326
		Stack = -1.3  for stack of 25-325
		Stack = -1.0  for stack of 26-324
	Helix total = -7.4
	Internal/bulge = 3.7  for closure of 27-323	Size = 3
		Stack = -3.3  for stack of 28-319
	Helix total = -3.3
	Internal/bulge = 3.7  for closure of 29-318	Size = 3
		Stack = -1.4  for stack of 33-317
		Stack = -2.1  for stack of 34-316
		Stack = -2.2  for stack of 35-315
	Helix total = -5.7
	Internal/bulge = 0.2  for closure of 36-314	Size = 4
		Stack = -2.2  for stack of 39-311
		Stack = -0.9  for stack of 40-310
	Helix total = -3.1
	Internal/bulge = 4.5  for closure of 41-309	Size = 5
		Stack = -2.1  for stack of 43-304
		Stack = -0.9  for stack of 44-303
		Stack = -2.1  for stack of 45-302
		Stack = -2.2  for stack of 46-301
	Helix total = -7.3
	Multiloop = 2.8  for closure of 47-300
		Stack = -2.2  for stack of 238-276
		Stack = -2.4  for stack of 239-275
	Helix total = -4.6
	Internal/bulge = 3.4  for closure of 240-274	Size = 7
		Stack = -2.4  for stack of 245-270
		Stack = -3.3  for stack of 246-269
		Stack = -1.4  for stack of 247-268
		Stack = -2.5  for stack of 248-267
		Stack = -2.4  for stack of 249-266
		Stack = -3.4  for stack of 250-265
		Stack = -3.3  for stack of 251-264
	Helix total = -18.7
	Hairpin = 4.1  for closure of 252-263
		Stack = -3.3  for stack of 193-221
		Stack = -3.3  for stack of 194-220
		Stack = -2.4  for stack of 195-219
	Helix total = -9.0
	Internal/bulge = 1.9  for closure of 196-218	Size = 2
		Stack = -1.4  for stack of 198-216
		Stack = -2.1  for stack of 199-215
		Stack = -2.5  for stack of 200-214
		Stack = -1.5  for stack of 201-213
	Helix total = -7.5
	Hairpin = 5.0  for closure of 202-212
		Stack = -3.3  for stack of 140-177
		Stack = -2.4  for stack of 141-176
		Stack = -3.3  for stack of 142-175
		Stack = -1.5  for stack of 143-174
	Helix total = -10.5
	Internal/bulge = 2.8  for closure of 144-173	Size = 7
		Stack = -2.1  for stack of 148-168
		Stack = -1.1  for stack of 149-167
		Stack = -1.3  for stack of 150-166
		Stack = -1.5  for stack of 151-165
		Stack = -3.3  for stack of 152-164
		Stack = -2.4  for stack of 153-163
	Helix total = -11.7
	Hairpin = 5.5  for closure of 154-162
		Stack = -2.4  for stack of 118-139
	Helix total = -2.4
	Internal/bulge = 1.2  for closure of 119-138	Size = 2
		Stack = -2.1  for stack of 121-136
		Stack = -3.4  for stack of 122-135
		Stack = -3.3  for stack of 123-134
	Helix total = -8.8
	Hairpin = 4.1  for closure of 124-133
		Stack = -2.4  for stack of 55-85
		Stack = -2.1  for stack of 56-84
		Stack = -2.1  for stack of 57-83
		Stack = -2.4  for stack of 58-82
		Stack = -2.2  for stack of 59-81
	Helix total = -11.2
	Hairpin = 4.9  for closure of 60-80


	Total energy = -80.7



