Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    55:69 56:68 57:67
	Energy of Broken Structure: -7.2
	Energy of Pseudo-Helices:   -1.3
	Pseudoknot Energy Penalty:  6.6
	Total Free Energy:          -1.9
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -1.7
		Stack = -3.3  for stack of 1-287
		Stack = -1.5  for stack of 2-286
		Stack = -2.1  for stack of 3-285
		Stack = -3.4  for stack of 4-284
		Stack = -2.1  for stack of 5-283
		Stack = -2.1  for stack of 6-282
	Helix total = -14.5
	Multiloop = 5.1  for closure of 7-281
		Stack = -2.2  for stack of 264-280
		Stack = -2.1  for stack of 265-279
		Stack = -3.3  for stack of 266-278
		Stack = -3.3  for stack of 267-277
	Helix total = -10.9
	Hairpin = 4.4  for closure of 268-276
		Stack = -2.1  for stack of 20-260
		Stack = -1.1  for stack of 21-259
		Stack = -0.9  for stack of 22-258
	Helix total = -4.1
	Internal/bulge = 2.6  for closure of 23-257	Size = 3
		Stack = -0.9  for stack of 26-255
		Stack = -1.1  for stack of 27-254
		Stack = -0.9  for stack of 28-253
		Stack = -0.9  for stack of 29-252
		Stack = -0.9  for stack of 30-251
	Helix total = -4.7
	Internal/bulge = 1.7  for closure of 31-250	Size = 2
		Stack = -0.6  for stack of 33-248
	Helix total = -0.6
	Internal/bulge = 3.1  for closure of 34-247	Size = 7
		Stack = -1.4  for stack of 38-242
	Helix total = -1.4
	Multiloop = 5.7  for closure of 39-241
	Helix total = 0.0
	Internal/bulge = 1.0  for closure of 224-240	Size = 6
		Stack = -2.2  for stack of 228-236
	Helix total = -2.2
	Hairpin = 5.2  for closure of 229-235
		Stack = -0.9  for stack of 41-221
		Stack = -1.0  for stack of 42-220
		Stack = -1.4  for stack of 43-219
		Stack = -0.9  for stack of 44-218
	Helix total = -4.2
	Internal/bulge = 8.8  for closure of 45-217	Size = 154
		Stack = -1.1  for stack of 46-62
		Stack = -1.3  for stack of 47-61
		Stack = -0.9  for stack of 48-60
		Stack = -2.2  for stack of 49-59
	Helix total = -5.5
	Hairpin = 5.0  for closure of 50-58


	Total energy = -7.2



