Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    48:66 49:65 50:64 51:63 52:62 150:182 151:181 152:180
	    153:179 154:178 155:177 157:175 198:232 199:231 200:230 201:229
	    202:228 203:227 204:226 249:287 250:286 251:285 252:284 253:283
	    254:282 255:281
	Energy of Broken Structure: -75.2
	Energy of Pseudo-Helices:   -50.2
	Pseudoknot Energy Penalty:  31.7
	Total Free Energy:          -93.7
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -1.7
		Stack = -3.3  for stack of 1-348
		Stack = -1.5  for stack of 2-347
		Stack = -2.1  for stack of 3-346
		Stack = -3.3  for stack of 4-345
		Stack = -3.4  for stack of 5-344
		Stack = -2.4  for stack of 6-343
	Helix total = -16.0
	Multiloop = 5.1  for closure of 7-342
		Stack = -3.4  for stack of 325-341
		Stack = -2.4  for stack of 326-340
		Stack = -3.3  for stack of 327-339
		Stack = -3.3  for stack of 328-338
	Helix total = -12.4
	Hairpin = 4.4  for closure of 329-337
		Stack = -2.4  for stack of 20-321
		Stack = -1.5  for stack of 21-320
		Stack = -2.1  for stack of 22-319
		Stack = -1.5  for stack of 23-318
		Stack = -1.3  for stack of 24-317
	Helix total = -8.8
	Internal/bulge = 1.2  for closure of 25-316	Size = 2
		Stack = -2.2  for stack of 27-314
	Helix total = -2.2
	Internal/bulge = 3.1  for closure of 28-313	Size = 7
		Stack = -2.5  for stack of 33-309
	Helix total = -2.5
	Internal/bulge = 3.3  for closure of 34-308	Size = 5
		Stack = -1.3  for stack of 37-304
		Stack = -2.1  for stack of 38-303
		Stack = -2.5  for stack of 39-302
	Helix total = -5.9
	Internal/bulge = 4.6  for closure of 40-301	Size = 7
		Stack = -2.1  for stack of 43-295
		Stack = -2.1  for stack of 44-294
		Stack = -3.3  for stack of 45-293
		Stack = -3.4  for stack of 46-292
	Helix total = -10.9
	Multiloop = 5.0  for closure of 47-291
		Stack = -1.4  for stack of 235-270
		Stack = -2.4  for stack of 236-269
	Helix total = -3.8
	Internal/bulge = 1.1  for closure of 237-268	Size = 5
		Stack = -2.1  for stack of 241-265
	Helix total = -2.1
	Internal/bulge = 1.2  for closure of 242-264	Size = 2
	Helix total = 0.0
	Internal/bulge = 3.7  for closure of 244-262	Size = 3
		Stack = -3.4  for stack of 245-258
		Stack = -3.3  for stack of 246-257
	Helix total = -6.7
	Hairpin = 4.5  for closure of 247-256
	Helix total = 0.0
	Internal/bulge = -1.4  for closure of 184-217	Size = 2
		Stack = -3.4  for stack of 186-215
		Stack = -2.1  for stack of 187-214
		Stack = -1.4  for stack of 188-213
		Stack = -1.5  for stack of 189-212
		Stack = -2.1  for stack of 190-211
	Helix total = -10.5
	Internal/bulge = 0.8  for closure of 191-210	Size = 4
		Stack = -2.4  for stack of 194-207
	Helix total = -2.4
	Hairpin = 4.3  for closure of 195-206
		Stack = -2.4  for stack of 133-169
		Stack = -2.2  for stack of 134-168
		Stack = -2.4  for stack of 135-167
	Helix total = -7.0
	Internal/bulge = 0.0  for closure of 136-166	Size = 4
		Stack = -2.2  for stack of 139-163
		Stack = -3.3  for stack of 140-162
		Stack = -2.4  for stack of 141-161
		Stack = -3.3  for stack of 142-160
		Stack = -2.2  for stack of 143-159
	Helix total = -13.4
	Hairpin = 6.6  for closure of 144-158
		Stack = -2.1  for stack of 112-132
		Stack = -3.3  for stack of 113-131
		Stack = -3.4  for stack of 114-130
		Stack = -2.1  for stack of 115-129
		Stack = -1.4  for stack of 116-128
	Helix total = -12.3
	Hairpin = 5.3  for closure of 117-127
		Stack = -3.4  for stack of 54-77
		Stack = -3.3  for stack of 55-76
		Stack = -2.4  for stack of 56-75
		Stack = -3.4  for stack of 57-74
		Stack = -2.1  for stack of 58-73
	Helix total = -14.6
	Hairpin = 5.2  for closure of 59-72


	Total energy = -75.2



