Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    56:78 57:77 58:76 59:75 60:74 158:197 159:196 160:195
	    161:194 162:193 163:192 213:246 214:245 215:244 216:243 217:242
	    218:241 264:302 265:301 266:300 267:299 268:298 270:296 271:295
	Energy of Broken Structure: -81.6
	Energy of Pseudo-Helices:   -41.2
	Pseudoknot Energy Penalty:  38.0
	Total Free Energy:          -84.8
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -1.7
		Stack = -3.3  for stack of 1-362
		Stack = -1.5  for stack of 2-361
		Stack = -2.1  for stack of 3-360
		Stack = -3.3  for stack of 4-359
		Stack = -3.4  for stack of 5-358
		Stack = -2.4  for stack of 6-357
	Helix total = -16.0
	Multiloop = 5.1  for closure of 7-356
		Stack = -3.4  for stack of 339-355
		Stack = -2.4  for stack of 340-354
		Stack = -3.3  for stack of 341-353
		Stack = -3.3  for stack of 342-352
	Helix total = -12.4
	Hairpin = 4.4  for closure of 343-351
		Stack = -2.4  for stack of 20-335
	Helix total = -2.4
	Internal/bulge = -1.4  for closure of 21-334	Size = 2
		Stack = -0.5  for stack of 23-332
		Stack = -1.3  for stack of 24-331
		Stack = -1.1  for stack of 25-330
		Stack = -2.1  for stack of 26-329
		Stack = -2.5  for stack of 27-328
	Helix total = -7.5
	Internal/bulge = 3.2  for closure of 28-327	Size = 8
		Stack = -2.1  for stack of 34-323
	Helix total = -2.1
	Internal/bulge = 2.7  for closure of 35-322	Size = 6
		Stack = -2.4  for stack of 39-318
		Stack = -2.2  for stack of 40-317
	Helix total = -4.6
	Internal/bulge = 4.0  for closure of 41-316	Size = 7
		Stack = -2.1  for stack of 44-310
		Stack = -1.1  for stack of 45-309
		Stack = -2.1  for stack of 46-308
		Stack = -2.2  for stack of 47-307
	Helix total = -7.5
	Multiloop = 1.6  for closure of 48-306
		Stack = -3.4  for stack of 248-285
		Stack = -2.4  for stack of 249-284
	Helix total = -5.8
	Internal/bulge = 0.8  for closure of 250-283	Size = 2
	Helix total = 0.0
	Internal/bulge = 1.9  for closure of 252-281	Size = 2
		Stack = -1.3  for stack of 254-279
		Stack = -2.1  for stack of 255-278
		Stack = -2.5  for stack of 256-277
	Helix total = -5.9
	Internal/bulge = 1.9  for closure of 257-276	Size = 2
		Stack = -2.4  for stack of 259-274
		Stack = -3.3  for stack of 260-273
	Helix total = -5.7
	Hairpin = 5.4  for closure of 261-272
		Stack = -3.4  for stack of 200-231
	Helix total = -3.4
	Internal/bulge = 1.9  for closure of 201-230	Size = 4
	Helix total = 0.0
	Internal/bulge = 1.7  for closure of 204-227	Size = 2
		Stack = -3.3  for stack of 206-225
		Stack = -3.3  for stack of 207-224
		Stack = -2.5  for stack of 208-223
		Stack = -1.4  for stack of 209-222
		Stack = -1.5  for stack of 210-221
		Stack = 1.3  for stack of 211-220
	Helix total = -10.7
	Hairpin = 4.3  for closure of 212-219
		Stack = -2.4  for stack of 141-182
		Stack = -2.5  for stack of 142-181
		Stack = -1.5  for stack of 143-180
		Stack = -2.1  for stack of 144-179
		Stack = -2.4  for stack of 145-178
	Helix total = -10.9
	Internal/bulge = 3.7  for closure of 146-177	Size = 3
		Stack = -1.5  for stack of 147-173
		Stack = -3.3  for stack of 148-172
		Stack = -2.1  for stack of 149-171
		Stack = -0.6  for stack of 150-170
		Stack = 1.3  for stack of 151-169
		Stack = -1.5  for stack of 152-168
		Stack = -3.3  for stack of 153-167
		Stack = -2.1  for stack of 154-166
		Stack = -2.4  for stack of 155-165
	Helix total = -15.5
	Hairpin = 5.2  for closure of 156-164
		Stack = -3.4  for stack of 111-140
		Stack = -2.1  for stack of 112-139
		Stack = -2.1  for stack of 113-138
		Stack = -2.2  for stack of 114-137
		Stack = -1.3  for stack of 115-136
	Helix total = -11.1
	Internal/bulge = 3.8  for closure of 116-135	Size = 2
		Stack = -2.5  for stack of 117-132
		Stack = -2.1  for stack of 118-131
		Stack = -2.1  for stack of 119-130
	Helix total = -6.7
	Hairpin = 4.4  for closure of 120-129
		Stack = -2.4  for stack of 49-66
		Stack = -2.4  for stack of 50-65
		Stack = -2.1  for stack of 51-64
		Stack = -3.4  for stack of 52-63
	Helix total = -10.3
	Hairpin = 4.0  for closure of 53-62


	Total energy = -81.6



