Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    52:81 53:80 54:79 55:78 58:75 150:182 151:181 152:180
	    153:179 154:178 156:176 157:175 197:230 199:228 200:227 201:226
	    202:225 203:224 249:288 250:287 251:286 252:285 253:284 254:283
	    255:282
	Energy of Broken Structure: -59.6
	Energy of Pseudo-Helices:   -34.9
	Pseudoknot Energy Penalty:  31.9
	Total Free Energy:          -62.6
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -1.7
		Stack = -3.3  for stack of 1-349
		Stack = -1.5  for stack of 2-348
		Stack = -2.1  for stack of 3-347
		Stack = -3.3  for stack of 4-346
		Stack = -3.4  for stack of 5-345
		Stack = -2.4  for stack of 6-344
	Helix total = -16.0
	Multiloop = 5.1  for closure of 7-343
		Stack = -3.4  for stack of 326-342
		Stack = -2.4  for stack of 327-341
		Stack = -3.3  for stack of 328-340
		Stack = -3.3  for stack of 329-339
	Helix total = -12.4
	Hairpin = 4.4  for closure of 330-338
		Stack = -2.4  for stack of 20-322
		Stack = -1.5  for stack of 21-321
		Stack = -0.5  for stack of 22-320
		Stack = -0.5  for stack of 23-319
		Stack = -1.3  for stack of 24-318
		Stack = -1.1  for stack of 25-317
		Stack = -1.3  for stack of 26-316
	Helix total = -8.6
	Internal/bulge = 1.7  for closure of 27-315	Size = 8
		Stack = -2.5  for stack of 32-310
		Stack = -2.1  for stack of 33-309
	Helix total = -4.6
	Internal/bulge = 3.7  for closure of 34-308	Size = 3
		Stack = -2.1  for stack of 36-305
		Stack = -3.3  for stack of 37-304
		Stack = -2.5  for stack of 38-303
	Helix total = -7.9
	Internal/bulge = 4.6  for closure of 39-302	Size = 7
		Stack = -2.1  for stack of 42-296
		Stack = -1.1  for stack of 43-295
		Stack = -2.1  for stack of 44-294
		Stack = -2.2  for stack of 45-293
	Helix total = -7.5
	Multiloop = 3.8  for closure of 46-292
	Helix total = 0.0
	Internal/bulge = 0.5  for closure of 236-268	Size = 2
		Stack = 0.3  for stack of 238-266
		Stack = -1.4  for stack of 239-265
	Helix total = -1.1
	Internal/bulge = 1.4  for closure of 240-264	Size = 4
	Helix total = 0.0
	Internal/bulge = 2.6  for closure of 243-261	Size = 5
		Stack = -3.3  for stack of 246-257
	Helix total = -3.3
	Hairpin = 4.5  for closure of 247-256
		Stack = -2.1  for stack of 183-217
	Helix total = -2.1
	Internal/bulge = -1.4  for closure of 184-216	Size = 2
		Stack = -2.5  for stack of 186-214
		Stack = -0.6  for stack of 187-213
		Stack = -2.1  for stack of 188-212
		Stack = -2.2  for stack of 189-211
		Stack = -0.9  for stack of 190-210
		Stack = -2.1  for stack of 191-209
	Helix total = -10.4
	Hairpin = 5.3  for closure of 192-208
		Stack = -2.4  for stack of 133-169
		Stack = -2.2  for stack of 134-168
		Stack = -2.4  for stack of 135-167
	Helix total = -7.0
	Internal/bulge = 0.0  for closure of 136-166	Size = 2
		Stack = -2.1  for stack of 138-164
		Stack = -1.3  for stack of 139-163
		Stack = -2.1  for stack of 140-162
	Helix total = -5.5
	Hairpin = 5.6  for closure of 141-161
		Stack = -2.1  for stack of 114-132
		Stack = -3.3  for stack of 115-131
		Stack = -3.4  for stack of 116-130
		Stack = -2.1  for stack of 117-129
		Stack = -2.1  for stack of 118-128
	Helix total = -13.0
	Hairpin = 5.5  for closure of 119-127
		Stack = -2.4  for stack of 47-64
		Stack = -3.3  for stack of 48-63
		Stack = -2.4  for stack of 49-62
		Stack = -2.1  for stack of 50-61
	Helix total = -10.2
	Hairpin = 4.4  for closure of 51-60


	Total energy = -59.6



