Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    48:66 49:65 50:64 51:63 52:62 147:182 148:181 149:180
	    150:179 151:178 152:177 185:212 186:211 187:210 190:206 191:205
	    192:204 247:284 248:283 249:282 250:281 251:280 252:279
	Energy of Broken Structure: -85.7
	Energy of Pseudo-Helices:   -47.6
	Pseudoknot Energy Penalty:  31.6
	Total Free Energy:          -101.7
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -1.7
		Stack = -3.3  for stack of 1-345
		Stack = -1.5  for stack of 2-344
		Stack = -2.1  for stack of 3-343
		Stack = -3.3  for stack of 4-342
		Stack = -2.2  for stack of 5-341
		Stack = -2.1  for stack of 6-340
	Helix total = -14.5
	Multiloop = 5.1  for closure of 7-339
		Stack = -3.3  for stack of 322-338
		Stack = -3.4  for stack of 323-337
		Stack = -2.4  for stack of 324-336
		Stack = -3.3  for stack of 325-335
	Helix total = -12.4
	Hairpin = 4.4  for closure of 326-334
		Stack = -2.1  for stack of 20-318
		Stack = -0.6  for stack of 21-317
		Stack = -0.5  for stack of 22-316
		Stack = -2.1  for stack of 23-315
		Stack = -3.3  for stack of 24-314
	Helix total = -8.6
	Internal/bulge = 2.3  for closure of 25-313	Size = 3
		Stack = -2.1  for stack of 28-311
		Stack = -1.4  for stack of 29-310
	Helix total = -3.5
	Internal/bulge = 2.2  for closure of 30-309	Size = 5
		Stack = -2.1  for stack of 33-305
		Stack = -2.5  for stack of 34-304
		Stack = -1.4  for stack of 35-303
	Helix total = -6.0
	Internal/bulge = 1.6  for closure of 36-302	Size = 1 BP stack across bulge = -2.2
		Stack = -2.1  for stack of 38-301
		Stack = -2.5  for stack of 39-300
	Helix total = -4.6
	Internal/bulge = 4.6  for closure of 40-299	Size = 7
		Stack = -2.4  for stack of 43-293
		Stack = -2.2  for stack of 44-292
		Stack = -2.1  for stack of 45-291
		Stack = -2.2  for stack of 46-290
	Helix total = -8.9
	Multiloop = 6.6  for closure of 47-289
		Stack = -2.4  for stack of 230-268
		Stack = -3.3  for stack of 231-267
	Helix total = -5.7
	Internal/bulge = 0.5  for closure of 232-266	Size = 2
		Stack = -2.1  for stack of 234-264
		Stack = -1.4  for stack of 235-263
	Helix total = -3.5
	Internal/bulge = -0.9  for closure of 236-262	Size = 1 BP stack across bulge = -3.4
		Stack = -2.4  for stack of 237-260
	Helix total = -2.4
	Internal/bulge = 0.9  for closure of 238-259	Size = 6
		Stack = -2.2  for stack of 242-255
		Stack = -3.3  for stack of 243-254
	Helix total = -5.5
	Hairpin = 3.4  for closure of 244-253
		Stack = -2.1  for stack of 197-226
		Stack = -2.4  for stack of 198-225
		Stack = -3.3  for stack of 199-224
		Stack = -2.1  for stack of 200-223
		Stack = -1.1  for stack of 201-222
		Stack = -1.3  for stack of 202-221
	Helix total = -12.3
	Hairpin = 6.5  for closure of 203-220
		Stack = -2.1  for stack of 129-168
		Stack = -2.4  for stack of 130-167
		Stack = -2.2  for stack of 131-166
	Helix total = -6.7
	Internal/bulge = -0.2  for closure of 132-165	Size = 4
		Stack = -3.3  for stack of 135-162
		Stack = -2.4  for stack of 136-161
		Stack = -2.5  for stack of 137-160
		Stack = -1.4  for stack of 138-159
	Helix total = -9.6
	Internal/bulge = 0.8  for closure of 139-158	Size = 4
		Stack = -3.4  for stack of 142-155
		Stack = -3.3  for stack of 143-154
	Helix total = -6.7
	Hairpin = 4.7  for closure of 144-153
		Stack = -2.4  for stack of 110-128
		Stack = -2.1  for stack of 111-127
		Stack = -2.4  for stack of 112-126
		Stack = -1.4  for stack of 113-125
		Stack = -2.5  for stack of 114-124
		Stack = -2.1  for stack of 115-123
	Helix total = -12.9
	Hairpin = 4.2  for closure of 116-122
		Stack = -3.4  for stack of 54-78
		Stack = -3.3  for stack of 55-77
		Stack = -2.4  for stack of 56-76
		Stack = -2.2  for stack of 57-75
		Stack = -0.9  for stack of 58-74
	Helix total = -12.2
	Hairpin = 5.3  for closure of 59-73


	Total energy = -85.7



