Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    48:66 49:65 50:64 51:63 52:62 147:187 148:186 149:185
	    150:184 151:183 152:182 153:181 154:180 201:230 202:229 203:228
	    204:227 205:226 206:225 249:284 250:283 251:282 253:280 255:278
	Energy of Broken Structure: -87.3
	Energy of Pseudo-Helices:   -43.3
	Pseudoknot Energy Penalty:  33.0
	Total Free Energy:          -97.6
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -1.7
		Stack = -3.3  for stack of 1-348
		Stack = -1.5  for stack of 2-347
		Stack = -2.1  for stack of 3-346
		Stack = -2.4  for stack of 4-345
		Stack = -2.2  for stack of 5-344
		Stack = -2.4  for stack of 6-343
	Helix total = -13.9
	Multiloop = 5.0  for closure of 7-342
		Stack = -3.3  for stack of 324-340
		Stack = -3.3  for stack of 325-339
		Stack = -2.4  for stack of 326-338
		Stack = -2.1  for stack of 327-337
	Helix total = -11.1
	Hairpin = 5.0  for closure of 328-336
		Stack = -2.1  for stack of 19-319
		Stack = -2.1  for stack of 20-318
		Stack = -1.5  for stack of 21-317
		Stack = -0.5  for stack of 22-316
		Stack = -1.3  for stack of 23-315
		Stack = -0.9  for stack of 24-314
		Stack = -2.1  for stack of 25-313
		Stack = -3.3  for stack of 26-312
	Helix total = -13.8
	Internal/bulge = 2.3  for closure of 27-311	Size = 3
		Stack = -1.5  for stack of 30-309
		Stack = -2.5  for stack of 31-308
	Helix total = -4.0
	Internal/bulge = 1.1  for closure of 32-307	Size = 3
	Helix total = 0.0
	Internal/bulge = 0.4  for closure of 35-305	Size = 2
		Stack = -3.3  for stack of 37-303
		Stack = -2.4  for stack of 38-302
		Stack = -1.1  for stack of 39-301
		Stack = -1.3  for stack of 40-300
	Helix total = -8.1
	Internal/bulge = 5.1  for closure of 41-299	Size = 6
		Stack = -2.1  for stack of 43-293
		Stack = -2.1  for stack of 44-292
		Stack = -3.3  for stack of 45-291
	Helix total = -7.5
	Multiloop = 3.1  for closure of 46-290
		Stack = -2.2  for stack of 233-268
		Stack = -1.3  for stack of 234-267
		Stack = -0.6  for stack of 235-266
		Stack = -2.1  for stack of 236-265
		Stack = -3.3  for stack of 237-264
		Stack = -3.4  for stack of 238-263
		Stack = -2.1  for stack of 239-262
		Stack = -1.3  for stack of 240-261
	Helix total = -16.3
	Internal/bulge = 1.4  for closure of 241-260	Size = 4
		Stack = -0.9  for stack of 244-257
	Helix total = -0.9
	Hairpin = 6.0  for closure of 245-256
		Stack = -2.4  for stack of 189-216
		Stack = -2.2  for stack of 190-215
		Stack = -1.3  for stack of 191-214
		Stack = -0.5  for stack of 192-213
		Stack = -1.5  for stack of 193-212
		Stack = -3.3  for stack of 194-211
		Stack = -3.3  for stack of 195-210
	Helix total = -14.5
	Hairpin = 5.7  for closure of 196-209
		Stack = -2.1  for stack of 132-171
		Stack = -1.4  for stack of 133-170
		Stack = -1.5  for stack of 134-169
		Stack = -3.3  for stack of 135-168
	Helix total = -8.3
	Internal/bulge = 2.2  for closure of 136-167	Size = 3
		Stack = -2.5  for stack of 138-164
		Stack = -2.1  for stack of 139-163
		Stack = -0.6  for stack of 140-162
		Stack = -2.1  for stack of 141-161
		Stack = -1.5  for stack of 142-160
		Stack = -2.5  for stack of 143-159
		Stack = -3.3  for stack of 144-158
		Stack = -3.3  for stack of 145-157
	Helix total = -17.9
	Hairpin = 5.3  for closure of 146-156
		Stack = -2.1  for stack of 111-131
		Stack = -3.4  for stack of 112-130
		Stack = -2.1  for stack of 113-129
		Stack = -2.1  for stack of 114-128
	Helix total = -9.7
	Internal/bulge = 0.5  for closure of 115-127	Size = 2
		Stack = -2.1  for stack of 117-125
	Helix total = -2.1
	Hairpin = 5.2  for closure of 118-124
		Stack = -3.4  for stack of 54-79
		Stack = -3.3  for stack of 55-78
		Stack = -2.1  for stack of 56-77
		Stack = -1.4  for stack of 57-76
		Stack = -1.5  for stack of 58-75
	Helix total = -11.7
	Hairpin = 5.9  for closure of 59-74


	Total energy = -87.3



