Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    142:194 144:193 145:192 146:191 147:190 148:189
	Energy of Broken Structure: -24.2
	Energy of Pseudo-Helices:   -9.1
	Pseudoknot Energy Penalty:  7.6
	Total Free Energy:          -25.7
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -1.8
		Stack = -1.1  for stack of 196-234
		Stack = -0.9  for stack of 197-233
		Stack = -2.4  for stack of 198-232
		Stack = -2.1  for stack of 199-231
		Stack = -0.9  for stack of 200-230
		Stack = -0.9  for stack of 201-229
	Helix total = -8.3
	Multiloop = 8.1  for closure of 202-228
		Stack = -1.3  for stack of 214-225
		Stack = -0.9  for stack of 215-224
		Stack = -2.2  for stack of 216-223
	Helix total = -4.4
	Hairpin = 3.3  for closure of 217-222
		Stack = -1.1  for stack of 203-213
		Stack = -2.4  for stack of 204-212
		Stack = -1.4  for stack of 205-211
	Helix total = -4.9
	Hairpin = 5.9  for closure of 206-210
		Stack = -1.3  for stack of 158-182
		Stack = -1.1  for stack of 159-181
		Stack = -2.4  for stack of 160-180
		Stack = -3.3  for stack of 161-179
		Stack = -2.1  for stack of 162-178
	Helix total = -10.2
	Internal/bulge = 3.3  for closure of 163-177	Size = 2
		Stack = -2.1  for stack of 166-176
		Stack = -1.1  for stack of 167-175
		Stack = -0.9  for stack of 168-174
	Helix total = -4.1
	Hairpin = 5.9  for closure of 169-173
		Stack = -2.2  for stack of 44-157
		Stack = -2.1  for stack of 45-156
		Stack = -2.4  for stack of 46-155
		Stack = -2.1  for stack of 47-154
		Stack = -2.4  for stack of 48-153
	Helix total = -11.2
	Multiloop = 8.5  for closure of 49-152
		Stack = -2.5  for stack of 114-138
	Helix total = -2.5
	Internal/bulge = 2.6  for closure of 115-137	Size = 7
		Stack = -2.2  for stack of 120-133
		Stack = -2.1  for stack of 121-132
		Stack = -0.9  for stack of 122-131
		Stack = -0.9  for stack of 123-130
	Helix total = -6.1
	Hairpin = 4.4  for closure of 124-129
		Stack = -2.4  for stack of 54-113
		Stack = -2.1  for stack of 55-112
		Stack = -2.1  for stack of 56-111
		Stack = -3.3  for stack of 57-110
		Stack = -1.5  for stack of 58-109
	Helix total = -11.4
	Internal/bulge = 2.7  for closure of 59-108	Size = 6
		Stack = -3.3  for stack of 63-104
	Helix total = -3.3
	Internal/bulge = 3.5  for closure of 64-103	Size = 13
		Stack = -0.9  for stack of 72-96
		Stack = -0.9  for stack of 73-95
		Stack = -0.9  for stack of 74-94
		Stack = -0.9  for stack of 75-93
		Stack = -0.9  for stack of 76-92
		Stack = -1.3  for stack of 77-91
		Stack = -1.1  for stack of 78-90
		Stack = -0.9  for stack of 79-89
		Stack = -0.9  for stack of 80-88
	Helix total = -8.7
	Hairpin = 5.4  for closure of 81-87
		Stack = -2.1  for stack of 17-37
		Stack = -0.9  for stack of 18-36
		Stack = -1.3  for stack of 19-35
		Stack = -0.9  for stack of 20-34
		Stack = -1.1  for stack of 21-33
	Helix total = -6.3
	Internal/bulge = 2.1  for closure of 22-32	Size = 1 BP stack across bulge = -1.3
		Stack = -0.9  for stack of 24-31
	Helix total = -0.9
	Hairpin = 4.4  for closure of 25-30
		Stack = -2.1  for stack of 1-14
		Stack = -1.3  for stack of 2-13
		Stack = -1.0  for stack of 3-12
		Stack = -0.9  for stack of 4-11
	Helix total = -5.3
	Hairpin = 5.1  for closure of 5-10


	Total energy = -24.2



