Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    49:67 50:66 51:65 52:64 53:63 147:185 148:184 149:183
	    150:182 151:181 152:180 201:232 202:231 203:230 204:229 205:228
	    250:286 251:285 252:284 253:283 254:282 255:281 256:280
	Energy of Broken Structure: -48.2
	Energy of Pseudo-Helices:   -43.3
	Pseudoknot Energy Penalty:  31.6
	Total Free Energy:          -59.9
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -1.7
		Stack = -3.3  for stack of 1-346
		Stack = -1.5  for stack of 2-345
		Stack = -2.1  for stack of 3-344
		Stack = -3.4  for stack of 4-343
		Stack = -2.4  for stack of 5-342
		Stack = -3.3  for stack of 6-341
	Helix total = -16.0
	Multiloop = 5.2  for closure of 7-340
		Stack = -3.3  for stack of 323-339
		Stack = -3.3  for stack of 324-338
		Stack = -3.3  for stack of 325-337
		Stack = -3.3  for stack of 326-336
	Helix total = -13.2
	Hairpin = 4.4  for closure of 327-335
		Stack = -2.1  for stack of 21-319
		Stack = -0.9  for stack of 22-318
		Stack = -0.6  for stack of 23-317
		Stack = -1.3  for stack of 24-316
	Helix total = -4.9
	Internal/bulge = 0.8  for closure of 25-315	Size = 4
	Helix total = 0.0
	Internal/bulge = 1.2  for closure of 28-312	Size = 2
	Helix total = 0.0
	Internal/bulge = 4.4  for closure of 30-310	Size = 9
		Stack = -2.4  for stack of 36-305
	Helix total = -2.4
	Internal/bulge = 0.2  for closure of 37-304	Size = 4
		Stack = -3.3  for stack of 40-301
		Stack = -2.2  for stack of 41-300
		Stack = -1.0  for stack of 42-299
	Helix total = -6.5
	Internal/bulge = 3.7  for closure of 43-298	Size = 3
		Stack = -2.1  for stack of 44-294
		Stack = -1.1  for stack of 45-293
		Stack = -2.1  for stack of 46-292
		Stack = -3.4  for stack of 47-291
	Helix total = -8.7
	Multiloop = 2.3  for closure of 48-290
		Stack = -2.2  for stack of 235-270
		Stack = -3.3  for stack of 236-269
		Stack = -2.1  for stack of 237-268
	Helix total = -7.6
	Internal/bulge = 3.5  for closure of 238-267	Size = 7
	Helix total = 0.0
	Internal/bulge = 2.2  for closure of 243-263	Size = 5
		Stack = -3.4  for stack of 246-259
		Stack = -3.3  for stack of 247-258
	Helix total = -6.7
	Hairpin = 3.4  for closure of 248-257
		Stack = -3.4  for stack of 188-217
		Stack = -2.4  for stack of 189-216
	Helix total = -5.8
	Internal/bulge = 2.7  for closure of 190-215	Size = 9
		Stack = -2.1  for stack of 196-210
		Stack = -3.4  for stack of 197-209
	Helix total = -5.5
	Hairpin = 5.0  for closure of 198-208
		Stack = -3.3  for stack of 129-170
		Stack = -2.1  for stack of 130-169
		Stack = -1.1  for stack of 131-168
		Stack = -2.4  for stack of 132-167
		Stack = -2.4  for stack of 133-166
	Helix total = -11.3
	Internal/bulge = 2.8  for closure of 134-165	Size = 2
		Stack = -3.3  for stack of 135-162
		Stack = -2.1  for stack of 136-161
		Stack = -1.3  for stack of 137-160
	Helix total = -6.7
	Internal/bulge = 3.7  for closure of 138-159	Size = 4
	Helix total = 0.0
	Internal/bulge = 0.8  for closure of 142-157	Size = 2
		Stack = -2.1  for stack of 144-155
	Helix total = -2.1
	Hairpin = 5.5  for closure of 145-154
	Helix total = 0.0
	Internal/bulge = 3.2  for closure of 110-128	Size = 6
		Stack = -3.4  for stack of 115-125
	Helix total = -3.4
	Hairpin = 5.0  for closure of 116-124
		Stack = -3.4  for stack of 55-78
		Stack = -2.4  for stack of 56-77
		Stack = -3.3  for stack of 57-76
		Stack = -2.5  for stack of 58-75
		Stack = -0.6  for stack of 59-74
	Helix total = -12.2
	Hairpin = 6.5  for closure of 60-73


	Total energy = -48.2



