Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    57:82 60:79 61:78 62:77 156:205 157:204 158:203 159:202
	    160:201 161:200 233:266 234:265 235:264 236:263 237:262 238:261
	    239:260 240:259 267:302 271:298 273:297 274:296 276:294 279:289
	Energy of Broken Structure: -71.4
	Energy of Pseudo-Helices:   -31.3
	Pseudoknot Energy Penalty:  36.1
	Total Free Energy:          -66.6
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -1.7
		Stack = -3.3  for stack of 1-383
		Stack = -1.5  for stack of 2-382
		Stack = -2.1  for stack of 3-381
		Stack = -3.3  for stack of 4-380
		Stack = -3.4  for stack of 5-379
		Stack = -2.4  for stack of 6-378
	Helix total = -16.0
	Multiloop = 6.5  for closure of 7-377
		Stack = -2.1  for stack of 360-376
		Stack = -3.3  for stack of 361-375
		Stack = -3.3  for stack of 362-374
		Stack = -3.3  for stack of 363-373
	Helix total = -12.0
	Hairpin = 4.4  for closure of 364-372
		Stack = -2.4  for stack of 20-356
		Stack = -1.5  for stack of 21-355
		Stack = -0.5  for stack of 22-354
		Stack = -1.3  for stack of 23-353
		Stack = -1.1  for stack of 24-352
		Stack = -1.3  for stack of 25-351
		Stack = -1.4  for stack of 26-350
		Stack = -2.2  for stack of 27-349
	Helix total = -11.7
	Internal/bulge = 2.1  for closure of 28-348	Size = 8
		Stack = -2.5  for stack of 33-343
	Helix total = -2.5
	Internal/bulge = -0.4  for closure of 34-342	Size = 4
		Stack = -2.4  for stack of 37-339
		Stack = -2.1  for stack of 38-338
		Stack = -2.5  for stack of 39-337
	Helix total = -7.0
	Internal/bulge = 3.6  for closure of 40-336	Size = 7
		Stack = -2.4  for stack of 43-330
		Stack = -3.3  for stack of 44-329
		Stack = -3.3  for stack of 45-328
		Stack = -2.2  for stack of 46-327
	Helix total = -11.2
	Multiloop = 4.7  for closure of 47-326
		Stack = -3.4  for stack of 282-322
		Stack = -3.3  for stack of 283-321
		Stack = -3.3  for stack of 284-320
		Stack = -2.1  for stack of 285-319
		Stack = -1.1  for stack of 286-318
		Stack = -2.1  for stack of 287-317
	Helix total = -15.3
	Hairpin = 5.0  for closure of 288-316
		Stack = -2.1  for stack of 222-252
		Stack = 0.3  for stack of 223-251
		Stack = -1.4  for stack of 224-250
		Stack = -2.4  for stack of 225-249
		Stack = -2.1  for stack of 226-248
		Stack = -2.2  for stack of 227-247
		Stack = -2.1  for stack of 228-246
		Stack = -2.1  for stack of 229-245
		Stack = -2.5  for stack of 230-244
	Helix total = -16.6
	Hairpin = 5.7  for closure of 231-243
		Stack = -0.6  for stack of 209-219
		Stack = -1.3  for stack of 210-218
	Helix total = -1.9
	Hairpin = 5.2  for closure of 211-217
		Stack = -2.5  for stack of 143-192
		Stack = -1.5  for stack of 144-191
	Helix total = -4.0
	Internal/bulge = 0.9  for closure of 145-190	Size = 2
	Helix total = 0.0
	Multiloop = 5.8  for closure of 147-188
		Stack = -2.1  for stack of 173-186
	Helix total = -2.1
	Internal/bulge = 1.9  for closure of 174-185	Size = 2
	Helix total = 0.0
	Hairpin = 5.2  for closure of 176-183
		Stack = -1.5  for stack of 148-169
		Stack = -3.3  for stack of 149-168
		Stack = -2.1  for stack of 150-167
		Stack = -0.6  for stack of 151-166
		Stack = -2.1  for stack of 152-165
		Stack = -3.3  for stack of 153-164
		Stack = -2.5  for stack of 154-163
	Helix total = -15.4
	Hairpin = 5.3  for closure of 155-162
		Stack = -3.4  for stack of 119-140
		Stack = -2.1  for stack of 120-139
		Stack = -2.1  for stack of 121-138
		Stack = -3.4  for stack of 122-137
	Helix total = -11.0
	Hairpin = 5.7  for closure of 123-136
		Stack = -2.1  for stack of 48-68
		Stack = -2.4  for stack of 49-67
		Stack = -2.1  for stack of 50-66
		Stack = -3.3  for stack of 51-65
	Helix total = -9.9
	Hairpin = 5.3  for closure of 52-64


	Total energy = -71.4



