Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    49:67 50:66 51:65 52:64 150:198 151:197 152:196 153:195
	    154:194 155:193 156:192 201:229 202:228 203:227 204:226 205:225
	    206:224 209:221 210:220 262:301 263:300 264:299 266:296 267:295
	    268:294
	Energy of Broken Structure: -68.1
	Energy of Pseudo-Helices:   -43.6
	Pseudoknot Energy Penalty:  32.7
	Total Free Energy:          -79.0
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -1.7
		Stack = -3.3  for stack of 1-361
		Stack = -1.5  for stack of 2-360
		Stack = -2.1  for stack of 3-359
		Stack = -3.3  for stack of 4-358
		Stack = -3.4  for stack of 5-357
		Stack = -2.4  for stack of 6-356
	Helix total = -16.0
	Multiloop = 5.1  for closure of 7-355
		Stack = -3.4  for stack of 338-354
		Stack = -2.4  for stack of 339-353
		Stack = -3.3  for stack of 340-352
		Stack = -3.3  for stack of 341-351
	Helix total = -12.4
	Hairpin = 4.4  for closure of 342-350
		Stack = -2.4  for stack of 20-334
		Stack = -1.5  for stack of 21-333
		Stack = -0.5  for stack of 22-332
		Stack = -0.5  for stack of 23-331
		Stack = -2.1  for stack of 24-330
		Stack = -2.2  for stack of 25-329
		Stack = -1.3  for stack of 26-328
	Helix total = -10.5
	Internal/bulge = 3.4  for closure of 27-327	Size = 9
		Stack = -2.5  for stack of 33-322
		Stack = -2.1  for stack of 34-321
		Stack = -2.1  for stack of 35-320
	Helix total = -6.7
	Internal/bulge = 2.3  for closure of 36-319	Size = 3
		Stack = -2.4  for stack of 39-317
		Stack = -2.1  for stack of 40-316
	Helix total = -4.5
	Internal/bulge = 2.9  for closure of 41-315	Size = 7
		Stack = -2.1  for stack of 44-309
		Stack = -1.1  for stack of 45-308
		Stack = -1.3  for stack of 46-307
		Stack = -2.2  for stack of 47-306
	Helix total = -6.7
	Multiloop = 4.9  for closure of 48-305
		Stack = -1.1  for stack of 286-293
	Helix total = -1.1
	Hairpin = 5.4  for closure of 287-292
		Stack = -2.5  for stack of 247-282
		Stack = -3.3  for stack of 248-281
	Helix total = -5.8
	Internal/bulge = 3.0  for closure of 249-280	Size = 9
		Stack = -3.3  for stack of 255-275
	Helix total = -3.3
	Internal/bulge = 1.1  for closure of 256-274	Size = 3
		Stack = -3.4  for stack of 258-271
		Stack = -3.3  for stack of 259-270
	Helix total = -6.7
	Hairpin = 4.1  for closure of 260-269
		Stack = -1.5  for stack of 211-246
		Stack = -2.1  for stack of 212-245
		Stack = -2.2  for stack of 213-244
		Stack = -0.9  for stack of 214-243
		Stack = -1.3  for stack of 215-242
		Stack = -2.2  for stack of 216-241
		Stack = -2.1  for stack of 217-240
		Stack = -0.6  for stack of 218-239
	Helix total = -12.9
	Hairpin = 6.8  for closure of 219-238
		Stack = -2.1  for stack of 136-183
		Stack = -2.2  for stack of 137-182
		Stack = -2.1  for stack of 138-181
		Stack = -1.3  for stack of 139-180
		Stack = -2.2  for stack of 140-179
		Stack = -2.1  for stack of 141-178
	Helix total = -12.0
	Multiloop = 4.8  for closure of 142-177
		Stack = -3.3  for stack of 163-176
		Stack = -3.3  for stack of 164-175
	Helix total = -6.6
	Hairpin = 4.4  for closure of 165-174
		Stack = -2.4  for stack of 144-161
		Stack = -3.3  for stack of 145-160
		Stack = -2.5  for stack of 146-159
		Stack = -0.5  for stack of 147-158
	Helix total = -8.7
	Hairpin = 5.3  for closure of 148-157
		Stack = -2.4  for stack of 111-135
		Stack = -2.1  for stack of 112-134
		Stack = -2.1  for stack of 113-133
		Stack = -3.3  for stack of 114-132
		Stack = -3.4  for stack of 115-131
	Helix total = -13.3
	Internal/bulge = 0.5  for closure of 116-130	Size = 2
	Helix total = 0.0
	Hairpin = 5.7  for closure of 118-128
		Stack = -0.9  for stack of 55-79
		Stack = -2.4  for stack of 56-78
		Stack = -2.1  for stack of 57-77
		Stack = -2.1  for stack of 58-76
		Stack = -2.5  for stack of 59-75
	Helix total = -10.0
	Hairpin = 6.7  for closure of 60-74


	Total energy = -68.1



