Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    54:74 55:73 56:72 57:71 162:195 163:194 164:193 165:192
	    166:191 167:190 212:241 213:240 214:239 215:238 216:237 217:236
	    260:297 261:296 262:295 264:293 265:292 266:291 267:290
	Energy of Broken Structure: -107.9
	Energy of Pseudo-Helices:   -49.7
	Pseudoknot Energy Penalty:  36.2
	Total Free Energy:          -121.4
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -1.7
		Stack = -3.3  for stack of 1-357
		Stack = -1.5  for stack of 2-356
		Stack = -2.1  for stack of 3-355
		Stack = -2.4  for stack of 4-354
		Stack = -1.1  for stack of 5-353
		Stack = -2.1  for stack of 6-352
	Helix total = -12.5
	Multiloop = 5.1  for closure of 7-351
		Stack = -3.3  for stack of 334-350
		Stack = -3.3  for stack of 335-349
		Stack = -3.3  for stack of 336-348
		Stack = -3.3  for stack of 337-347
	Helix total = -13.2
	Hairpin = 4.4  for closure of 338-346
		Stack = -2.1  for stack of 20-330
		Stack = -2.1  for stack of 21-329
		Stack = -1.5  for stack of 22-328
		Stack = -0.5  for stack of 23-327
		Stack = -1.3  for stack of 24-326
		Stack = -2.1  for stack of 25-325
		Stack = -2.5  for stack of 26-324
	Helix total = -12.1
	Internal/bulge = 2.6  for closure of 27-323	Size = 3
	Helix total = 0.0
	Internal/bulge = 1.9  for closure of 30-321	Size = 2
		Stack = -2.5  for stack of 32-319
		Stack = -3.3  for stack of 33-318
		Stack = -2.4  for stack of 34-317
		Stack = -2.5  for stack of 35-316
		Stack = -1.0  for stack of 36-315
		Stack = -2.1  for stack of 37-314
		Stack = -2.4  for stack of 38-313
		Stack = -2.2  for stack of 39-312
	Helix total = -18.4
	Internal/bulge = 3.3  for closure of 40-311	Size = 7
		Stack = -2.1  for stack of 43-305
		Stack = -2.1  for stack of 44-304
		Stack = -3.3  for stack of 45-303
		Stack = -2.2  for stack of 46-302
	Helix total = -9.7
	Multiloop = 4.3  for closure of 47-301
		Stack = -2.5  for stack of 244-280
		Stack = -3.3  for stack of 245-279
		Stack = -3.3  for stack of 246-278
	Helix total = -9.1
	Internal/bulge = 2.3  for closure of 247-277	Size = 3
		Stack = -1.4  for stack of 250-275
		Stack = -2.1  for stack of 251-274
		Stack = -2.2  for stack of 252-273
		Stack = -2.4  for stack of 253-272
		Stack = -2.4  for stack of 254-271
		Stack = -3.4  for stack of 255-270
	Helix total = -13.9
	Hairpin = 4.6  for closure of 256-269
		Stack = -3.3  for stack of 200-227
		Stack = -2.4  for stack of 201-226
		Stack = -1.5  for stack of 202-225
		Stack = -1.4  for stack of 203-224
		Stack = -1.3  for stack of 204-223
		Stack = -0.9  for stack of 205-222
		Stack = -2.2  for stack of 206-221
		Stack = -2.4  for stack of 207-220
		Stack = -3.4  for stack of 208-219
	Helix total = -18.8
	Hairpin = 4.5  for closure of 209-218
		Stack = -2.4  for stack of 146-183
		Stack = -3.4  for stack of 147-182
		Stack = -2.1  for stack of 148-181
		Stack = -2.4  for stack of 149-180
		Stack = -2.4  for stack of 150-179
	Helix total = -12.7
	Internal/bulge = 2.8  for closure of 151-178	Size = 2
		Stack = -3.3  for stack of 152-175
		Stack = -2.4  for stack of 153-174
		Stack = -2.2  for stack of 154-173
		Stack = -1.3  for stack of 155-172
		Stack = -0.6  for stack of 156-171
		Stack = -2.5  for stack of 157-170
		Stack = -2.1  for stack of 158-169
	Helix total = -14.4
	Hairpin = 5.5  for closure of 159-168
		Stack = -2.4  for stack of 125-145
		Stack = -3.4  for stack of 126-144
		Stack = -3.3  for stack of 127-143
		Stack = -2.4  for stack of 128-142
		Stack = -3.4  for stack of 129-141
		Stack = -2.1  for stack of 130-140
	Helix total = -17.0
	Hairpin = 5.1  for closure of 131-139
		Stack = -2.4  for stack of 48-64
		Stack = -2.2  for stack of 49-63
		Stack = -2.1  for stack of 50-62
	Helix total = -6.7
	Hairpin = 5.9  for closure of 51-61


	Total energy = -107.9



