Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    153:300 155:299 156:298 157:297 158:296
	Energy of Broken Structure: -72.3
	Energy of Pseudo-Helices:   -6.7
	Pseudoknot Energy Penalty:  7.3
	Total Free Energy:          -71.7
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -4.3
		Stack = -1.1  for stack of 301-367
	Helix total = -1.1
	Multiloop = 6.2  for closure of 302-366
		Stack = -0.6  for stack of 326-363
		Stack = -1.4  for stack of 327-362
		Stack = -0.9  for stack of 328-361
		Stack = -0.9  for stack of 329-360
		Stack = -0.9  for stack of 330-359
		Stack = -1.3  for stack of 331-358
		Stack = -0.9  for stack of 332-357
		Stack = -0.9  for stack of 333-356
		Stack = -2.1  for stack of 334-355
	Helix total = -9.9
	Internal/bulge = 0.4  for closure of 335-354	Size = 1 BP stack across bulge = -3.4
		Stack = -3.3  for stack of 337-353
		Stack = -2.4  for stack of 338-352
	Helix total = -5.7
	Hairpin = 6.1  for closure of 339-351
		Stack = -3.3  for stack of 304-321
		Stack = -2.1  for stack of 305-320
		Stack = -0.9  for stack of 306-319
		Stack = -0.9  for stack of 307-318
		Stack = -1.3  for stack of 308-317
		Stack = -2.2  for stack of 309-316
	Helix total = -10.7
	Hairpin = 3.3  for closure of 310-315
		Stack = -2.4  for stack of 264-286
		Stack = -3.3  for stack of 265-285
		Stack = -2.1  for stack of 266-284
		Stack = -2.1  for stack of 267-283
		Stack = -3.4  for stack of 268-282
	Helix total = -13.3
	Hairpin = 5.6  for closure of 269-281
		Stack = -2.4  for stack of 45-262
		Stack = -2.4  for stack of 46-261
		Stack = -3.3  for stack of 47-260
		Stack = -3.4  for stack of 48-259
	Helix total = -11.5
	Multiloop = 3.8  for closure of 49-258
		Stack = -1.1  for stack of 227-252
		Stack = -1.3  for stack of 228-251
		Stack = -1.4  for stack of 229-250
		Stack = -0.6  for stack of 230-249
		Stack = -0.9  for stack of 231-248
		Stack = -0.9  for stack of 232-247
		Stack = -2.4  for stack of 233-246
		Stack = -2.1  for stack of 234-245
		Stack = -1.5  for stack of 235-244
		Stack = -1.4  for stack of 236-243
	Helix total = -13.6
	Hairpin = 5.3  for closure of 237-242
		Stack = -0.6  for stack of 159-225
		Stack = -1.3  for stack of 160-224
		Stack = -1.1  for stack of 161-223
		Stack = -1.3  for stack of 162-222
		Stack = -0.9  for stack of 163-221
		Stack = -0.9  for stack of 164-220
		Stack = -1.1  for stack of 165-219
		Stack = -1.3  for stack of 166-218
	Helix total = -8.5
	Internal/bulge = 1.9  for closure of 167-217	Size = 2
		Stack = -2.1  for stack of 169-215
		Stack = -3.4  for stack of 170-214
	Helix total = -5.5
	Hairpin = 7.2  for closure of 171-213
		Stack = -3.3  for stack of 132-149
	Helix total = -3.3
	Internal/bulge = 2.3  for closure of 133-148	Size = 4
		Stack = -2.4  for stack of 137-146
		Stack = -2.2  for stack of 138-145
	Helix total = -4.6
	Hairpin = 5.6  for closure of 139-144
		Stack = -2.4  for stack of 55-131
		Stack = -2.4  for stack of 56-130
		Stack = -3.3  for stack of 57-129
		Stack = -2.5  for stack of 58-128
		Stack = -1.4  for stack of 59-127
	Helix total = -12.0
	Internal/bulge = 2.0  for closure of 60-126	Size = 6
		Stack = -3.3  for stack of 64-122
	Helix total = -3.3
	Internal/bulge = 2.3  for closure of 65-121	Size = 5
		Stack = -2.1  for stack of 69-118
		Stack = -1.3  for stack of 70-117
		Stack = -1.1  for stack of 71-116
		Stack = -0.9  for stack of 72-115
		Stack = -2.1  for stack of 73-114
		Stack = -2.5  for stack of 74-113
		Stack = -0.5  for stack of 75-112
		Stack = -0.5  for stack of 76-111
	Helix total = -11.0
	Hairpin = 6.8  for closure of 77-110
		Stack = -2.1  for stack of 20-39
		Stack = -3.4  for stack of 21-38
		Stack = -2.1  for stack of 22-37
		Stack = -0.9  for stack of 23-36
		Stack = -1.0  for stack of 24-35
		Stack = -2.5  for stack of 25-34
		Stack = -2.1  for stack of 26-33
	Helix total = -14.1
	Hairpin = 4.4  for closure of 27-32
		Stack = -2.2  for stack of 1-18
		Stack = -2.4  for stack of 2-17
		Stack = -2.5  for stack of 3-16
		Stack = -1.0  for stack of 4-15
	Helix total = -8.1
	Hairpin = 5.0  for closure of 5-14


	Total energy = -72.3



