Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    50:70 51:69 52:68 53:67 54:66 154:189 155:188 156:187
	    157:186 158:185 159:184 204:239 205:238 206:237 207:236 208:235
	    209:234 210:233 255:293 256:292 257:291 258:290 259:289 260:288
	    261:287
	Energy of Broken Structure: -103.5
	Energy of Pseudo-Helices:   -55.6
	Pseudoknot Energy Penalty:  53.9
	Total Free Energy:          -105.2
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -1.7
		Stack = -3.3  for stack of 1-355
		Stack = -1.5  for stack of 2-354
		Stack = -2.1  for stack of 3-353
		Stack = -3.3  for stack of 4-352
		Stack = -3.4  for stack of 5-351
		Stack = -2.4  for stack of 6-350
	Helix total = -16.0
	Multiloop = 5.2  for closure of 7-349
	Helix total = 0.0
	Internal/bulge = 0.6  for closure of 332-348	Size = 2
		Stack = -3.3  for stack of 334-346
		Stack = -3.3  for stack of 335-345
	Helix total = -6.6
	Hairpin = 4.4  for closure of 336-344
		Stack = -2.4  for stack of 20-327
		Stack = -3.3  for stack of 21-326
		Stack = -1.5  for stack of 22-325
		Stack = -2.1  for stack of 23-324
		Stack = -3.3  for stack of 24-323
		Stack = -2.4  for stack of 25-322
	Helix total = -15.0
	Internal/bulge = 1.0  for closure of 26-321	Size = 4
	Helix total = 0.0
	Internal/bulge = 3.3  for closure of 29-318	Size = 2
		Stack = -1.5  for stack of 32-317
		Stack = -0.5  for stack of 33-316
		Stack = -2.5  for stack of 34-315
		Stack = -3.3  for stack of 35-314
		Stack = -2.4  for stack of 36-313
		Stack = -2.4  for stack of 37-312
		Stack = -0.9  for stack of 38-311
		Stack = -0.9  for stack of 39-310
		Stack = -2.1  for stack of 40-309
		Stack = -2.5  for stack of 41-308
	Helix total = -19.0
	Internal/bulge = 3.6  for closure of 42-307	Size = 7
		Stack = -2.4  for stack of 45-301
		Stack = -2.4  for stack of 46-300
		Stack = -2.1  for stack of 47-299
		Stack = -3.3  for stack of 48-298
	Helix total = -10.2
	Multiloop = 4.4  for closure of 49-297
		Stack = -2.5  for stack of 240-275
		Stack = -3.3  for stack of 241-274
		Stack = -3.3  for stack of 242-273
		Stack = -2.4  for stack of 243-272
	Helix total = -11.5
	Internal/bulge = 2.2  for closure of 244-271	Size = 3
	Helix total = 0.0
	Internal/bulge = 2.9  for closure of 247-269	Size = 6
	Helix total = 0.0
	Internal/bulge = -2.3  for closure of 250-264	Size = 2
	Helix total = 0.0
	Hairpin = 5.4  for closure of 252-262
		Stack = -3.4  for stack of 192-223
		Stack = -2.1  for stack of 193-222
		Stack = -0.9  for stack of 194-221
		Stack = -1.3  for stack of 195-220
		Stack = -1.1  for stack of 196-219
		Stack = -2.1  for stack of 197-218
		Stack = -2.4  for stack of 198-217
		Stack = -0.9  for stack of 199-216
		Stack = -2.1  for stack of 200-215
		Stack = -1.5  for stack of 201-214
		Stack = -2.1  for stack of 202-213
	Helix total = -19.9
	Hairpin = 4.4  for closure of 203-212
		Stack = -2.4  for stack of 137-175
		Stack = -2.5  for stack of 138-174
		Stack = -1.5  for stack of 139-173
		Stack = -3.3  for stack of 140-172
		Stack = -2.1  for stack of 141-171
		Stack = -1.4  for stack of 142-170
		Stack = -2.4  for stack of 143-169
		Stack = -2.2  for stack of 144-168
		Stack = -1.4  for stack of 145-167
		Stack = -2.1  for stack of 146-166
		Stack = -2.4  for stack of 147-165
		Stack = -0.9  for stack of 148-164
		Stack = -2.1  for stack of 149-163
		Stack = -3.4  for stack of 150-162
		Stack = -2.1  for stack of 151-161
	Helix total = -32.2
	Hairpin = 5.8  for closure of 152-160
		Stack = -1.3  for stack of 115-136
		Stack = -2.1  for stack of 116-135
		Stack = -3.4  for stack of 117-134
		Stack = -2.1  for stack of 118-133
		Stack = -2.1  for stack of 119-132
	Helix total = -11.0
	Hairpin = 5.4  for closure of 120-131
		Stack = -3.3  for stack of 57-84
		Stack = -3.3  for stack of 58-83
		Stack = -2.1  for stack of 59-82
		Stack = -1.4  for stack of 60-81
		Stack = -1.5  for stack of 61-80
	Helix total = -11.6
	Hairpin = 4.9  for closure of 62-79


	Total energy = -103.5



