Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    49:66 50:65 51:64 52:63 53:62 155:196 156:195 157:194
	    158:193 159:192 160:191 212:252 213:251 214:250 215:249 216:248
	    217:247 218:246 219:245 268:302 269:301 270:300 271:299 273:296
	    274:295
	Energy of Broken Structure: -41.3
	Energy of Pseudo-Helices:   -37.3
	Pseudoknot Energy Penalty:  32.9
	Total Free Energy:          -45.7
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -1.7
		Stack = -3.3  for stack of 1-363
		Stack = -1.5  for stack of 2-362
		Stack = -2.1  for stack of 3-361
		Stack = -3.4  for stack of 4-360
		Stack = -2.1  for stack of 5-359
		Stack = -2.1  for stack of 6-358
	Helix total = -14.5
	Multiloop = 5.2  for closure of 7-357
		Stack = -3.4  for stack of 340-356
		Stack = -2.4  for stack of 341-355
		Stack = -3.3  for stack of 342-354
		Stack = -3.3  for stack of 343-353
	Helix total = -12.4
	Hairpin = 4.4  for closure of 344-352
		Stack = -2.1  for stack of 21-336
		Stack = -0.9  for stack of 22-335
		Stack = -0.9  for stack of 23-334
		Stack = -0.9  for stack of 24-333
		Stack = -1.1  for stack of 25-332
		Stack = -0.9  for stack of 26-331
	Helix total = -6.8
	Internal/bulge = 1.9  for closure of 27-330	Size = 2
		Stack = -0.9  for stack of 29-328
	Helix total = -0.9
	Internal/bulge = 3.4  for closure of 30-327	Size = 6
	Helix total = 0.0
	Internal/bulge = 2.1  for closure of 34-323	Size = 4
	Helix total = 0.0
	Internal/bulge = -0.7  for closure of 37-320	Size = 2
	Helix total = 0.0
	Internal/bulge = 1.9  for closure of 39-318	Size = 2
		Stack = -1.4  for stack of 41-316
		Stack = -1.0  for stack of 42-315
	Helix total = -2.4
	Internal/bulge = 3.7  for closure of 43-314	Size = 3
		Stack = -2.1  for stack of 44-310
		Stack = -1.1  for stack of 45-309
		Stack = -2.1  for stack of 46-308
		Stack = -3.4  for stack of 47-307
	Helix total = -8.7
	Multiloop = 3.6  for closure of 48-306
		Stack = -1.1  for stack of 253-285
	Helix total = -1.1
	Internal/bulge = 1.9  for closure of 254-284	Size = 2
		Stack = -1.3  for stack of 256-282
		Stack = -1.1  for stack of 257-281
		Stack = -2.4  for stack of 258-280
	Helix total = -4.8
	Internal/bulge = 1.2  for closure of 259-279	Size = 2
		Stack = -1.1  for stack of 261-277
	Helix total = -1.1
	Internal/bulge = 3.7  for closure of 262-276	Size = 3
	Helix total = 0.0
	Hairpin = 4.4  for closure of 266-275
		Stack = -3.4  for stack of 199-233
		Stack = -2.1  for stack of 200-232
		Stack = -0.9  for stack of 201-231
		Stack = -2.2  for stack of 202-230
	Helix total = -8.6
	Internal/bulge = 3.0  for closure of 203-229	Size = 5
		Stack = -0.9  for stack of 206-225
		Stack = -0.9  for stack of 207-224
		Stack = -1.1  for stack of 208-223
		Stack = -2.4  for stack of 209-222
		Stack = -2.1  for stack of 210-221
	Helix total = -7.4
	Hairpin = 5.0  for closure of 211-220
		Stack = -3.3  for stack of 138-182
		Stack = -2.1  for stack of 139-181
		Stack = -0.9  for stack of 140-180
		Stack = -2.4  for stack of 141-179
		Stack = -2.1  for stack of 142-178
	Helix total = -10.8
	Internal/bulge = 6.7  for closure of 143-177	Size = 8
		Stack = -0.9  for stack of 145-169
		Stack = -1.3  for stack of 146-168
		Stack = -0.9  for stack of 147-167
		Stack = -0.9  for stack of 148-166
		Stack = -2.2  for stack of 149-165
		Stack = -2.1  for stack of 150-164
		Stack = -1.1  for stack of 151-163
	Helix total = -9.4
	Hairpin = 5.9  for closure of 152-162
		Stack = -3.4  for stack of 108-137
		Stack = -2.1  for stack of 109-136
		Stack = -0.9  for stack of 110-135
		Stack = -0.9  for stack of 111-134
		Stack = -1.3  for stack of 112-133
	Helix total = -8.6
	Internal/bulge = 1.9  for closure of 113-132	Size = 3
		Stack = -2.1  for stack of 115-129
		Stack = -2.1  for stack of 116-128
	Helix total = -4.2
	Hairpin = 5.9  for closure of 117-127
		Stack = -1.1  for stack of 54-78
		Stack = -2.1  for stack of 55-77
		Stack = -3.3  for stack of 56-76
		Stack = -2.2  for stack of 57-75
		Stack = -0.9  for stack of 58-74
	Helix total = -9.6
	Hairpin = 6.6  for closure of 59-73


	Total energy = -41.3



