Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    50:68 51:67 52:66 53:65 54:64 162:208 163:207 164:206
	    165:205 166:204 167:203 225:257 226:256 227:255 228:254 229:253
	    230:252 260:295 262:293 266:289
	Energy of Broken Structure: -37.5
	Energy of Pseudo-Helices:   -31.0
	Pseudoknot Energy Penalty:  31.7
	Total Free Energy:          -36.8
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -1.7
		Stack = -3.3  for stack of 1-372
		Stack = -1.5  for stack of 2-371
		Stack = -2.1  for stack of 3-370
		Stack = -3.4  for stack of 4-369
		Stack = -2.1  for stack of 5-368
		Stack = -2.1  for stack of 6-367
	Helix total = -14.5
	Multiloop = 5.2  for closure of 7-366
		Stack = -3.4  for stack of 349-365
		Stack = -2.4  for stack of 350-364
		Stack = -3.3  for stack of 351-363
		Stack = -3.3  for stack of 352-362
	Helix total = -12.4
	Hairpin = 4.4  for closure of 353-361
		Stack = -2.1  for stack of 21-345
		Stack = -0.9  for stack of 22-344
		Stack = -0.9  for stack of 23-343
		Stack = -0.6  for stack of 24-342
		Stack = -1.4  for stack of 25-341
		Stack = -0.9  for stack of 26-340
	Helix total = -6.8
	Internal/bulge = 1.9  for closure of 27-339	Size = 2
	Helix total = 0.0
	Internal/bulge = 4.1  for closure of 29-337	Size = 7
		Stack = -0.9  for stack of 34-333
		Stack = -0.9  for stack of 35-332
	Helix total = -1.8
	Internal/bulge = 0.7  for closure of 36-331	Size = 4
		Stack = -0.9  for stack of 39-328
	Helix total = -0.9
	Internal/bulge = 1.9  for closure of 40-327	Size = 2
		Stack = -1.4  for stack of 42-325
		Stack = -1.0  for stack of 43-324
	Helix total = -2.4
	Internal/bulge = 3.7  for closure of 44-323	Size = 3
		Stack = -2.1  for stack of 45-319
		Stack = -1.1  for stack of 46-318
		Stack = -2.1  for stack of 47-317
		Stack = -3.4  for stack of 48-316
	Helix total = -8.7
	Multiloop = 3.9  for closure of 49-315
	Helix total = 0.0
	Internal/bulge = 1.6  for closure of 272-311	Size = 4
	Helix total = 0.0
	Internal/bulge = 2.0  for closure of 275-308	Size = 1 BP stack across bulge = -0.9
		Stack = -0.9  for stack of 277-307
		Stack = -1.3  for stack of 278-306
	Helix total = -2.2
	Hairpin = 7.3  for closure of 279-305
		Stack = -2.1  for stack of 213-240
		Stack = -2.2  for stack of 214-239
		Stack = -2.1  for stack of 215-238
	Helix total = -6.4
	Internal/bulge = 2.3  for closure of 216-237	Size = 3
		Stack = -2.1  for stack of 219-235
		Stack = -2.2  for stack of 220-234
		Stack = -2.1  for stack of 221-233
		Stack = -1.3  for stack of 222-232
	Helix total = -7.7
	Hairpin = 5.9  for closure of 223-231
		Stack = -3.3  for stack of 144-192
		Stack = -2.1  for stack of 145-191
		Stack = -0.9  for stack of 146-190
		Stack = -0.9  for stack of 147-189
		Stack = -2.4  for stack of 148-188
	Helix total = -9.6
	Internal/bulge = 6.2  for closure of 149-187	Size = 10
		Stack = -2.4  for stack of 151-177
		Stack = -2.1  for stack of 152-176
		Stack = -2.4  for stack of 153-175
	Helix total = -6.9
	Internal/bulge = 2.0  for closure of 154-174	Size = 6
		Stack = -2.1  for stack of 158-170
		Stack = -1.3  for stack of 159-169
	Helix total = -3.4
	Hairpin = 6.0  for closure of 160-168
		Stack = -3.4  for stack of 114-143
		Stack = -2.1  for stack of 115-142
		Stack = -0.9  for stack of 116-141
		Stack = -0.9  for stack of 117-140
		Stack = -1.3  for stack of 118-139
	Helix total = -8.6
	Internal/bulge = 3.2  for closure of 119-138	Size = 1 BP stack across bulge = -0.6
		Stack = -2.5  for stack of 120-136
		Stack = -2.1  for stack of 121-135
		Stack = -2.1  for stack of 122-134
	Helix total = -6.7
	Hairpin = 5.3  for closure of 123-133
		Stack = -2.2  for stack of 56-80
		Stack = -2.4  for stack of 57-79
		Stack = -3.3  for stack of 58-78
		Stack = -2.2  for stack of 59-77
		Stack = -0.9  for stack of 60-76
	Helix total = -11.0
	Hairpin = 6.6  for closure of 61-75


	Total energy = -37.5



