Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    48:68 49:67 50:66 51:65 52:64 171:205 172:204 173:203
	    174:202 175:201 176:200 223:253 224:252 225:251 226:250 227:249
	    228:248 257:286 258:285 259:284 260:283
	Energy of Broken Structure: -85.1
	Energy of Pseudo-Helices:   -35.1
	Pseudoknot Energy Penalty:  36.1
	Total Free Energy:          -84.1
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -1.7
		Stack = -3.3  for stack of 1-373
		Stack = -1.5  for stack of 2-372
		Stack = -2.1  for stack of 3-371
		Stack = -2.4  for stack of 4-370
		Stack = -1.1  for stack of 5-369
		Stack = -2.1  for stack of 6-368
	Helix total = -12.5
	Multiloop = 5.0  for closure of 7-367
		Stack = -3.4  for stack of 350-366
		Stack = -2.4  for stack of 351-365
		Stack = -3.3  for stack of 352-364
		Stack = -3.3  for stack of 353-363
	Helix total = -12.4
	Hairpin = 4.4  for closure of 354-362
		Stack = -2.4  for stack of 19-346
		Stack = -2.2  for stack of 20-345
		Stack = -2.4  for stack of 21-344
		Stack = -2.4  for stack of 22-343
		Stack = -3.3  for stack of 23-342
	Helix total = -12.7
	Internal/bulge = 2.6  for closure of 24-341	Size = 13
	Helix total = 0.0
	Internal/bulge = 0.8  for closure of 32-334	Size = 2
		Stack = -1.4  for stack of 34-332
		Stack = -2.1  for stack of 35-331
		Stack = -3.3  for stack of 36-330
		Stack = -2.4  for stack of 37-329
	Helix total = -9.2
	Internal/bulge = 2.4  for closure of 38-328	Size = 10
		Stack = -2.4  for stack of 43-321
		Stack = -3.3  for stack of 44-320
		Stack = -3.3  for stack of 45-319
		Stack = -3.4  for stack of 46-318
	Helix total = -12.4
	Multiloop = 2.9  for closure of 47-317
		Stack = -2.2  for stack of 273-313
		Stack = -0.9  for stack of 274-312
		Stack = -2.4  for stack of 275-311
		Stack = -2.4  for stack of 276-310
		Stack = -2.2  for stack of 277-309
		Stack = -2.1  for stack of 278-308
	Helix total = -12.2
	Internal/bulge = 0.7  for closure of 279-307	Size = 2
	Helix total = 0.0
	Hairpin = 6.9  for closure of 281-305
		Stack = -2.1  for stack of 211-239
		Stack = -0.6  for stack of 212-238
		Stack = -2.4  for stack of 213-237
		Stack = -2.1  for stack of 214-236
		Stack = -2.1  for stack of 215-235
		Stack = -2.4  for stack of 216-234
		Stack = -1.1  for stack of 217-233
		Stack = -1.3  for stack of 218-232
		Stack = -1.4  for stack of 219-231
	Helix total = -15.5
	Hairpin = 6.2  for closure of 220-230
		Stack = -2.4  for stack of 156-192
		Stack = -2.5  for stack of 157-191
		Stack = -1.5  for stack of 158-190
		Stack = -2.1  for stack of 159-189
		Stack = -2.1  for stack of 160-188
	Helix total = -10.6
	Internal/bulge = 2.3  for closure of 161-187	Size = 4
		Stack = -2.1  for stack of 163-183
		Stack = -1.3  for stack of 164-182
		Stack = -2.1  for stack of 165-181
		Stack = -2.4  for stack of 166-180
		Stack = -2.1  for stack of 167-179
		Stack = -2.2  for stack of 168-178
	Helix total = -12.2
	Hairpin = 5.9  for closure of 169-177
		Stack = -2.4  for stack of 116-155
		Stack = -1.1  for stack of 117-154
		Stack = -0.9  for stack of 118-153
		Stack = -1.3  for stack of 119-152
	Helix total = -5.7
	Internal/bulge = 3.0  for closure of 120-151	Size = 8
		Stack = -2.1  for stack of 125-146
		Stack = -2.4  for stack of 126-145
		Stack = -2.4  for stack of 127-144
	Helix total = -6.9
	Internal/bulge = 2.8  for closure of 128-143	Size = 2
		Stack = -3.4  for stack of 131-142
		Stack = -3.3  for stack of 132-141
		Stack = -2.1  for stack of 133-140
	Helix total = -8.8
	Hairpin = 5.3  for closure of 134-139
		Stack = -2.1  for stack of 54-83
		Stack = -2.5  for stack of 55-82
		Stack = -1.0  for stack of 56-81
		Stack = -2.1  for stack of 57-80
		Stack = -2.4  for stack of 58-79
	Helix total = -10.1
	Hairpin = 6.6  for closure of 59-78


	Total energy = -85.1



