Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    56:80 57:79 58:78 59:77 60:76 176:222 177:221 178:220
	    180:219 238:273 239:272 240:270 241:269 242:268 243:267 292:327
	    293:326 294:325 295:324 297:322 299:320
	Energy of Broken Structure: -39.7
	Energy of Pseudo-Helices:   -26.1
	Pseudoknot Energy Penalty:  38.3
	Total Free Energy:          -27.5
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -1.7
		Stack = -3.3  for stack of 1-389
		Stack = -1.5  for stack of 2-388
		Stack = -2.1  for stack of 3-387
		Stack = -3.4  for stack of 4-386
		Stack = -2.1  for stack of 5-385
		Stack = -2.1  for stack of 6-384
	Helix total = -14.5
	Multiloop = 5.2  for closure of 7-383
		Stack = -3.4  for stack of 366-382
		Stack = -2.4  for stack of 367-381
		Stack = -3.3  for stack of 368-380
		Stack = -3.3  for stack of 369-379
	Helix total = -12.4
	Hairpin = 4.4  for closure of 370-378
	Helix total = 0.0
	Internal/bulge = 0.4  for closure of 21-362	Size = 2
		Stack = -2.4  for stack of 23-360
		Stack = -0.9  for stack of 24-359
		Stack = -1.1  for stack of 25-358
	Helix total = -4.4
	Internal/bulge = 1.9  for closure of 26-357	Size = 2
	Helix total = 0.0
	Internal/bulge = 1.9  for closure of 28-355	Size = 2
	Helix total = 0.0
	Internal/bulge = 3.0  for closure of 30-353	Size = 9
		Stack = -0.9  for stack of 36-348
		Stack = -0.9  for stack of 37-347
	Helix total = -1.8
	Internal/bulge = 3.1  for closure of 38-346	Size = 7
		Stack = -1.4  for stack of 42-341
		Stack = -1.0  for stack of 43-340
	Helix total = -2.4
	Internal/bulge = 3.7  for closure of 44-339	Size = 3
		Stack = -2.1  for stack of 45-335
		Stack = -1.1  for stack of 46-334
		Stack = -2.1  for stack of 47-333
		Stack = -2.2  for stack of 48-332
	Helix total = -7.5
	Multiloop = 4.2  for closure of 49-331
		Stack = -1.1  for stack of 276-312
		Stack = -0.9  for stack of 277-311
		Stack = -2.1  for stack of 278-310
		Stack = -2.4  for stack of 279-309
	Helix total = -6.5
	Internal/bulge = 3.8  for closure of 280-308	Size = 2
		Stack = -0.9  for stack of 283-307
	Helix total = -0.9
	Internal/bulge = 3.0  for closure of 284-306	Size = 5
		Stack = -2.4  for stack of 287-302
		Stack = -2.2  for stack of 288-301
	Helix total = -4.6
	Hairpin = 5.0  for closure of 289-300
		Stack = -2.4  for stack of 226-254
		Stack = -2.1  for stack of 227-253
		Stack = -1.1  for stack of 228-252
		Stack = -0.9  for stack of 229-251
		Stack = -1.3  for stack of 230-250
	Helix total = -7.8
	Internal/bulge = 3.7  for closure of 231-249	Size = 3
	Helix total = 0.0
	Internal/bulge = 1.9  for closure of 234-247	Size = 2
	Helix total = 0.0
	Hairpin = 5.2  for closure of 236-245
		Stack = -3.3  for stack of 157-208
		Stack = -2.1  for stack of 158-207
		Stack = -2.4  for stack of 159-206
		Stack = -2.1  for stack of 160-205
		Stack = -0.9  for stack of 161-204
		Stack = -1.3  for stack of 162-203
	Helix total = -12.1
	Internal/bulge = 5.9  for closure of 163-202	Size = 10
		Stack = -1.1  for stack of 164-191
		Stack = -0.9  for stack of 165-190
		Stack = -0.9  for stack of 166-189
		Stack = -0.9  for stack of 167-188
		Stack = -1.3  for stack of 168-187
		Stack = -0.6  for stack of 169-186
		Stack = -0.9  for stack of 170-185
		Stack = -2.1  for stack of 171-184
		Stack = -2.2  for stack of 172-183
	Helix total = -10.9
	Hairpin = 5.3  for closure of 173-182
		Stack = -2.4  for stack of 110-156
		Stack = -0.9  for stack of 111-155
		Stack = -2.2  for stack of 112-154
		Stack = -3.3  for stack of 113-153
		Stack = -2.1  for stack of 114-152
	Helix total = -10.9
	Internal/bulge = 4.3  for closure of 115-151	Size = 12
		Stack = -1.1  for stack of 121-143
		Stack = -0.9  for stack of 122-142
		Stack = -1.3  for stack of 123-141
		Stack = -0.6  for stack of 124-140
		Stack = -2.5  for stack of 125-139
	Helix total = -6.4
	Hairpin = 5.2  for closure of 126-138
		Stack = -2.4  for stack of 50-68
		Stack = -2.4  for stack of 51-67
		Stack = -2.1  for stack of 52-66
		Stack = -3.3  for stack of 53-65
	Helix total = -10.2
	Hairpin = 4.2  for closure of 54-64


	Total energy = -39.7



