Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    49:69 50:68 51:67 52:66 184:218 185:217 186:216 187:215
	    188:214 189:213 234:268 236:266 237:265 239:263 240:262 285:333
	    286:332 287:331 288:330 289:329 290:328
	Energy of Broken Structure: -95.7
	Energy of Pseudo-Helices:   -33.4
	Pseudoknot Energy Penalty:  36.3
	Total Free Energy:          -92.8
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -1.7
		Stack = -3.3  for stack of 1-393
		Stack = -1.5  for stack of 2-392
		Stack = -2.1  for stack of 3-391
		Stack = -3.3  for stack of 4-390
		Stack = -3.4  for stack of 5-389
		Stack = -2.4  for stack of 6-388
	Helix total = -16.0
	Multiloop = 4.9  for closure of 7-387
		Stack = -2.4  for stack of 370-386
		Stack = -3.3  for stack of 371-385
		Stack = -3.3  for stack of 372-384
		Stack = -3.3  for stack of 373-383
	Helix total = -12.3
	Hairpin = 4.4  for closure of 374-382
		Stack = -2.4  for stack of 19-366
		Stack = -1.5  for stack of 20-365
		Stack = -1.4  for stack of 21-364
		Stack = -2.1  for stack of 22-363
		Stack = -2.4  for stack of 23-362
		Stack = -2.2  for stack of 24-361
		Stack = -3.3  for stack of 25-360
	Helix total = -15.3
	Internal/bulge = 1.2  for closure of 26-359	Size = 2
	Helix total = 0.0
	Internal/bulge = 2.9  for closure of 28-357	Size = 6
		Stack = -2.1  for stack of 33-354
		Stack = 0.3  for stack of 34-353
		Stack = -2.5  for stack of 35-352
		Stack = -2.1  for stack of 36-351
		Stack = -2.1  for stack of 37-350
	Helix total = -8.5
	Internal/bulge = 2.9  for closure of 38-349	Size = 12
		Stack = -2.4  for stack of 44-341
		Stack = -2.2  for stack of 45-340
		Stack = -2.1  for stack of 46-339
		Stack = -3.4  for stack of 47-338
	Helix total = -10.1
	Multiloop = 3.1  for closure of 48-337
		Stack = -2.1  for stack of 272-303
		Stack = -1.5  for stack of 273-302
	Helix total = -3.6
	Internal/bulge = 2.8  for closure of 274-301	Size = 2
		Stack = -2.1  for stack of 277-300
		Stack = -1.1  for stack of 278-299
		Stack = -2.4  for stack of 279-298
	Helix total = -5.6
	Internal/bulge = 1.3  for closure of 280-297	Size = 2
		Stack = -1.4  for stack of 282-295
	Helix total = -1.4
	Hairpin = 6.4  for closure of 283-294
		Stack = -1.4  for stack of 223-251
		Stack = -2.4  for stack of 224-250
		Stack = -1.1  for stack of 225-249
		Stack = -2.1  for stack of 226-248
		Stack = -3.4  for stack of 227-247
		Stack = -2.1  for stack of 228-246
		Stack = -2.1  for stack of 229-245
		Stack = -2.5  for stack of 230-244
		Stack = -0.5  for stack of 231-243
	Helix total = -17.6
	Hairpin = 5.3  for closure of 232-242
		Stack = -2.4  for stack of 169-205
		Stack = -2.5  for stack of 170-204
		Stack = -0.6  for stack of 171-203
		Stack = -2.4  for stack of 172-202
		Stack = -2.1  for stack of 173-201
	Helix total = -10.0
	Internal/bulge = 3.7  for closure of 174-200	Size = 4
		Stack = -2.4  for stack of 176-196
		Stack = -3.3  for stack of 177-195
		Stack = -2.1  for stack of 178-194
		Stack = -2.4  for stack of 179-193
		Stack = -3.3  for stack of 180-192
	Helix total = -13.5
	Hairpin = 5.4  for closure of 181-191
		Stack = -2.5  for stack of 116-160
		Stack = -0.6  for stack of 117-159
		Stack = -2.4  for stack of 118-158
		Stack = -1.4  for stack of 119-157
		Stack = -2.5  for stack of 120-156
		Stack = -2.1  for stack of 121-155
	Helix total = -11.5
	Internal/bulge = 2.8  for closure of 122-154	Size = 14
		Stack = -3.3  for stack of 130-146
		Stack = -2.1  for stack of 131-145
		Stack = -2.1  for stack of 132-144
		Stack = -2.4  for stack of 133-143
		Stack = -1.4  for stack of 134-142
		Stack = -0.6  for stack of 135-141
	Helix total = -11.9
	Hairpin = 5.9  for closure of 136-140
		Stack = -3.4  for stack of 56-83
		Stack = -3.3  for stack of 57-82
		Stack = -2.4  for stack of 58-81
		Stack = -3.3  for stack of 59-80
		Stack = -3.3  for stack of 60-79
	Helix total = -15.7
	Hairpin = 6.0  for closure of 61-78


	Total energy = -95.7



