Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    48:71 49:70 50:69 51:68 52:67 166:215 167:214 168:213
	    169:212 170:211 171:210 232:262 233:261 234:260 281:320 282:319
	    285:316 286:315
	Energy of Broken Structure: -20.6
	Energy of Pseudo-Helices:   -25.3
	Pseudoknot Energy Penalty:  31.6
	Total Free Energy:          -14.3
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -1.7
		Stack = -3.3  for stack of 1-381
		Stack = -1.5  for stack of 2-380
		Stack = -2.1  for stack of 3-379
		Stack = -3.3  for stack of 4-378
		Stack = -2.2  for stack of 5-377
		Stack = -2.1  for stack of 6-376
	Helix total = -14.5
	Multiloop = 5.1  for closure of 7-375
		Stack = -3.4  for stack of 358-374
		Stack = -2.4  for stack of 359-373
		Stack = -3.3  for stack of 360-372
		Stack = -3.3  for stack of 361-371
	Helix total = -12.4
	Hairpin = 4.4  for closure of 362-370
		Stack = -2.4  for stack of 20-354
		Stack = -1.5  for stack of 21-353
		Stack = -2.1  for stack of 22-352
		Stack = -2.2  for stack of 23-351
		Stack = -0.9  for stack of 24-350
		Stack = -2.1  for stack of 25-349
	Helix total = -11.2
	Internal/bulge = 1.2  for closure of 26-348	Size = 2
	Helix total = 0.0
	Internal/bulge = 2.7  for closure of 28-346	Size = 8
		Stack = -1.4  for stack of 33-341
	Helix total = -1.4
	Internal/bulge = 1.7  for closure of 34-340	Size = 4
		Stack = -2.1  for stack of 37-337
		Stack = -2.5  for stack of 38-336
		Stack = -1.4  for stack of 39-335
		Stack = -3.3  for stack of 40-334
		Stack = -1.5  for stack of 41-333
	Helix total = -10.8
	Internal/bulge = 3.7  for closure of 42-332	Size = 3
		Stack = -2.4  for stack of 43-328
		Stack = -2.2  for stack of 44-327
		Stack = -2.1  for stack of 45-326
		Stack = -2.5  for stack of 46-325
	Helix total = -9.2
	Multiloop = 7.7  for closure of 47-324
	Helix total = 0.0
	Internal/bulge = 2.8  for closure of 266-302	Size = 12
		Stack = -2.4  for stack of 273-295
	Helix total = -2.4
	Internal/bulge = 3.3  for closure of 274-294	Size = 5
	Helix total = 0.0
	Hairpin = 6.5  for closure of 277-290
		Stack = -0.9  for stack of 222-253
	Helix total = -0.9
	Internal/bulge = 2.4  for closure of 223-252	Size = 4
		Stack = -2.5  for stack of 226-249
		Stack = -2.1  for stack of 227-248
		Stack = -2.1  for stack of 228-247
		Stack = -3.4  for stack of 229-246
		Stack = -2.1  for stack of 230-245
	Helix total = -12.2
	Hairpin = 6.4  for closure of 231-244
	Helix total = 0.0
	Internal/bulge = 1.9  for closure of 148-190	Size = 2
		Stack = -0.6  for stack of 150-188
		Stack = -0.9  for stack of 151-187
	Helix total = -1.5
	Internal/bulge = 6.4  for closure of 152-186	Size = 13
		Stack = -1.4  for stack of 155-174
	Helix total = -1.4
	Hairpin = 6.7  for closure of 156-173
		Stack = -0.9  for stack of 128-140
		Stack = -1.3  for stack of 129-139
		Stack = -0.9  for stack of 130-138
	Helix total = -3.1
	Hairpin = 5.6  for closure of 131-137
		Stack = -3.3  for stack of 55-84
		Stack = -2.2  for stack of 56-83
	Helix total = -5.5
	Internal/bulge = -0.7  for closure of 57-82	Size = 2
		Stack = -2.4  for stack of 59-80
		Stack = -3.3  for stack of 60-79
	Helix total = -5.7
	Hairpin = 5.5  for closure of 61-78


	Total energy = -20.6



