Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    55:72 56:71 57:70 150:186 151:185 152:184 153:183 154:182
	    155:181 192:216 193:215 197:209 198:208 250:290 251:289 252:288
	    253:287
	Energy of Broken Structure: -74.0
	Energy of Pseudo-Helices:   -30.6
	Pseudoknot Energy Penalty:  30.9
	Total Free Energy:          -73.7
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -1.7
		Stack = -3.3  for stack of 1-352
		Stack = -1.5  for stack of 2-351
		Stack = -2.1  for stack of 3-350
		Stack = -2.4  for stack of 4-349
		Stack = -2.2  for stack of 5-348
		Stack = -2.4  for stack of 6-347
	Helix total = -13.9
	Multiloop = 5.1  for closure of 7-346
		Stack = -2.2  for stack of 329-345
		Stack = -2.1  for stack of 330-344
		Stack = -3.3  for stack of 331-343
		Stack = -3.3  for stack of 332-342
	Helix total = -10.9
	Hairpin = 4.4  for closure of 333-341
		Stack = -2.1  for stack of 20-325
		Stack = -2.1  for stack of 21-324
		Stack = -1.5  for stack of 22-323
		Stack = -0.5  for stack of 23-322
		Stack = -1.3  for stack of 24-321
		Stack = -2.2  for stack of 25-320
		Stack = -2.4  for stack of 26-319
	Helix total = -12.1
	Internal/bulge = 1.7  for closure of 27-318	Size = 12
		Stack = -3.4  for stack of 34-311
		Stack = -2.1  for stack of 35-310
		Stack = -0.9  for stack of 36-309
	Helix total = -6.4
	Internal/bulge = -0.7  for closure of 37-308	Size = 2
		Stack = -2.1  for stack of 39-306
		Stack = -3.4  for stack of 40-305
	Helix total = -5.5
	Internal/bulge = 3.9  for closure of 41-304	Size = 7
		Stack = -2.4  for stack of 44-298
		Stack = -2.4  for stack of 45-297
		Stack = -2.1  for stack of 46-296
		Stack = -3.4  for stack of 47-295
	Helix total = -10.3
	Multiloop = 0.5  for closure of 48-294
		Stack = -3.4  for stack of 235-271
		Stack = -2.1  for stack of 236-270
		Stack = -2.4  for stack of 237-269
	Helix total = -7.9
	Internal/bulge = 0.3  for closure of 238-268	Size = 4
		Stack = -2.1  for stack of 241-265
	Helix total = -2.1
	Internal/bulge = 2.6  for closure of 242-264	Size = 7
		Stack = -3.4  for stack of 246-259
		Stack = -3.3  for stack of 247-258
	Helix total = -6.7
	Hairpin = 4.5  for closure of 248-257
		Stack = -2.2  for stack of 202-232
		Stack = -2.4  for stack of 203-231
		Stack = -2.1  for stack of 204-230
		Stack = -2.1  for stack of 205-229
		Stack = -2.4  for stack of 206-228
	Helix total = -11.2
	Hairpin = 6.0  for closure of 207-227
	Helix total = 0.0
	Internal/bulge = 1.0  for closure of 135-172	Size = 4
		Stack = -2.1  for stack of 138-169
		Stack = -1.3  for stack of 139-168
	Helix total = -3.4
	Internal/bulge = 3.8  for closure of 140-167	Size = 2
	Helix total = 0.0
	Internal/bulge = 1.2  for closure of 141-164	Size = 2
		Stack = -3.3  for stack of 143-162
	Helix total = -3.3
	Internal/bulge = 0.1  for closure of 144-161	Size = 1 BP stack across bulge = -2.4
		Stack = -3.4  for stack of 145-159
		Stack = -2.1  for stack of 146-158
		Stack = -1.4  for stack of 147-157
	Helix total = -6.9
	Hairpin = 6.0  for closure of 148-156
		Stack = -3.4  for stack of 114-132
		Stack = -2.1  for stack of 115-131
		Stack = -2.1  for stack of 116-130
		Stack = -3.4  for stack of 117-129
	Helix total = -11.0
	Internal/bulge = 0.5  for closure of 118-128	Size = 1 BP stack across bulge = -3.3
		Stack = -2.1  for stack of 119-126
	Helix total = -2.1
	Hairpin = 5.3  for closure of 120-125
		Stack = -2.4  for stack of 49-63
		Stack = -2.4  for stack of 50-62
		Stack = -2.1  for stack of 51-61
		Stack = -2.4  for stack of 52-60
	Helix total = -9.3
	Hairpin = 4.5  for closure of 53-59


	Total energy = -74.0



