Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    146:199 147:198 148:197 149:196 150:195 151:194 152:193 221:254
	    223:252 225:250 227:248
	Energy of Broken Structure: 5.5
	Energy of Pseudo-Helices:   -7.0
	Pseudoknot Energy Penalty:  16.2
	Total Free Energy:          14.7
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -1.7
		Stack = -3.3  for stack of 1-308
		Stack = -1.5  for stack of 2-307
		Stack = -1.3  for stack of 3-306
		Stack = -1.4  for stack of 4-305
		Stack = -0.6  for stack of 5-304
		Stack = -2.1  for stack of 6-303
	Helix total = -10.2
	Multiloop = 5.1  for closure of 7-302
		Stack = -3.4  for stack of 285-301
		Stack = -2.4  for stack of 286-300
		Stack = -3.3  for stack of 287-299
		Stack = -3.3  for stack of 288-298
	Helix total = -12.4
	Hairpin = 4.4  for closure of 289-297
		Stack = -2.1  for stack of 20-281
		Stack = -2.1  for stack of 21-280
		Stack = -1.5  for stack of 22-279
		Stack = -0.5  for stack of 23-278
		Stack = -2.1  for stack of 24-277
		Stack = -2.4  for stack of 25-276
	Helix total = -10.7
	Internal/bulge = 3.5  for closure of 26-275	Size = 10
		Stack = -1.0  for stack of 33-270
		Stack = -1.1  for stack of 34-269
		Stack = -1.3  for stack of 35-268
	Helix total = -3.4
	Internal/bulge = 6.3  for closure of 36-267	Size = 10
		Stack = -1.4  for stack of 44-263
		Stack = -1.0  for stack of 45-262
		Stack = -2.2  for stack of 46-261
		Stack = -2.1  for stack of 47-260
	Helix total = -6.7
	Multiloop = 8.8  for closure of 48-259
		Stack = -0.6  for stack of 203-241
	Helix total = -0.6
	Internal/bulge = 2.9  for closure of 204-240	Size = 4
	Helix total = 0.0
	Internal/bulge = 1.9  for closure of 207-237	Size = 2
		Stack = -1.3  for stack of 209-235
	Helix total = -1.3
	Internal/bulge = 1.9  for closure of 210-234	Size = 2
	Helix total = 0.0
	Hairpin = 6.7  for closure of 212-232
	Helix total = 0.0
	Internal/bulge = 1.9  for closure of 127-181	Size = 2
		Stack = -1.3  for stack of 129-179
		Stack = -0.6  for stack of 130-178
	Helix total = -1.9
	Internal/bulge = 1.9  for closure of 131-177	Size = 2
	Helix total = 0.0
	Internal/bulge = 2.6  for closure of 133-175	Size = 10
		Stack = -2.1  for stack of 139-169
	Helix total = -2.1
	Internal/bulge = 1.9  for closure of 140-168	Size = 2
	Helix total = 0.0
	Hairpin = 7.2  for closure of 142-166
		Stack = -2.4  for stack of 49-61
		Stack = -2.2  for stack of 50-60
		Stack = -1.3  for stack of 51-59
	Helix total = -5.9
	Hairpin = 5.4  for closure of 52-58


	Total energy = 5.5



