Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    24:50 25:49 26:48 27:47 28:46
	Energy of Broken Structure: -28.4
	Energy of Pseudo-Helices:   -11.2
	Pseudoknot Energy Penalty:  7.2
	Total Free Energy:          -32.4
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = 0.3
		Stack = -1.0  for stack of 3-271
		Stack = -2.5  for stack of 4-270
		Stack = -3.3  for stack of 5-269
		Stack = -2.4  for stack of 6-268
		Stack = -2.2  for stack of 7-267
		Stack = -2.1  for stack of 8-266
	Helix total = -13.5
	Multiloop = 6.7  for closure of 9-265
		Stack = -3.3  for stack of 67-262
		Stack = -2.1  for stack of 68-261
	Helix total = -5.4
	Internal/bulge = 1.0  for closure of 69-260	Size = 1 BP stack across bulge = -2.4
		Stack = -2.1  for stack of 70-258
	Helix total = -2.1
	Internal/bulge = 1.7  for closure of 71-257	Size = 6
		Stack = -1.5  for stack of 75-253
		Stack = -1.4  for stack of 76-252
		Stack = -0.9  for stack of 77-251
	Helix total = -3.8
	Internal/bulge = 1.9  for closure of 78-250	Size = 2
	Helix total = 0.0
	Internal/bulge = 1.9  for closure of 80-248	Size = 2
	Helix total = 0.0
	Internal/bulge = 1.2  for closure of 82-246	Size = 2
		Stack = -3.4  for stack of 84-244
		Stack = -2.1  for stack of 85-243
		Stack = 0.3  for stack of 86-242
		Stack = -1.4  for stack of 87-241
		Stack = -1.3  for stack of 88-240
		Stack = -0.9  for stack of 89-239
		Stack = -2.1  for stack of 90-238
	Helix total = -10.9
	Internal/bulge = 2.2  for closure of 91-237	Size = 11
	Helix total = 0.0
	Internal/bulge = 1.0  for closure of 98-231	Size = 2
		Stack = -1.0  for stack of 100-229
		Stack = -0.9  for stack of 101-228
		Stack = -2.1  for stack of 102-227
		Stack = -2.5  for stack of 103-226
		Stack = -1.0  for stack of 104-225
	Helix total = -7.5
	Internal/bulge = 2.1  for closure of 105-224	Size = 4
	Helix total = 0.0
	Internal/bulge = 5.4  for closure of 108-221	Size = 15
		Stack = -2.2  for stack of 118-214
		Stack = -0.9  for stack of 119-213
		Stack = -1.3  for stack of 120-212
		Stack = 0.3  for stack of 121-211
		Stack = -2.1  for stack of 122-210
	Helix total = -6.2
	Internal/bulge = 4.5  for closure of 123-209	Size = 5
	Helix total = 0.0
	Internal/bulge = 1.2  for closure of 125-204	Size = 2
		Stack = -2.1  for stack of 127-202
		Stack = -2.1  for stack of 128-201
		Stack = -3.4  for stack of 129-200
		Stack = -2.4  for stack of 130-199
	Helix total = -10.0
	Internal/bulge = 1.4  for closure of 131-198	Size = 4
	Helix total = 0.0
	Internal/bulge = 3.3  for closure of 134-195	Size = 2
		Stack = -2.4  for stack of 135-192
		Stack = -1.5  for stack of 136-191
		Stack = -2.1  for stack of 137-190
	Helix total = -6.0
	Internal/bulge = 3.2  for closure of 138-189	Size = 6
		Stack = -3.3  for stack of 141-184
		Stack = -3.3  for stack of 142-183
		Stack = -2.4  for stack of 143-182
		Stack = -2.5  for stack of 144-181
	Helix total = -11.5
	Internal/bulge = 3.9  for closure of 145-180	Size = 8
		Stack = -0.9  for stack of 151-176
		Stack = -2.1  for stack of 152-175
	Helix total = -3.0
	Internal/bulge = 2.4  for closure of 153-174	Size = 10
		Stack = -2.4  for stack of 159-168
		Stack = -3.3  for stack of 160-167
	Helix total = -5.7
	Hairpin = 3.3  for closure of 161-166
		Stack = -3.4  for stack of 14-59
	Helix total = -3.4
	Multiloop = 4.8  for closure of 15-58
		Stack = -2.1  for stack of 38-57
	Helix total = -2.1
	Internal/bulge = 1.7  for closure of 39-56	Size = 1 BP stack across bulge = -2.1
	Helix total = 0.0
	Hairpin = 5.7  for closure of 41-55
		Stack = -3.3  for stack of 18-33
	Helix total = -3.3
	Hairpin = 5.2  for closure of 19-32


	Total energy = -28.4



