Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    21:47 22:46 23:45 24:44 25:43
	Energy of Broken Structure: -61.2
	Energy of Pseudo-Helices:   -10.7
	Pseudoknot Energy Penalty:  7.4
	Total Free Energy:          -64.5
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -1.1
		Stack = -3.3  for stack of 2-266
		Stack = -2.4  for stack of 3-265
		Stack = -2.2  for stack of 4-264
		Stack = -2.1  for stack of 5-263
	Helix total = -10.0
	Multiloop = 6.4  for closure of 6-262
		Stack = -3.3  for stack of 64-259
		Stack = -2.1  for stack of 65-258
		Stack = -0.9  for stack of 66-257
		Stack = -2.4  for stack of 67-256
		Stack = -2.1  for stack of 68-255
	Helix total = -10.8
	Internal/bulge = 1.7  for closure of 69-254	Size = 6
		Stack = -1.5  for stack of 73-250
		Stack = -1.4  for stack of 74-249
		Stack = -0.9  for stack of 75-248
		Stack = -1.3  for stack of 76-247
		Stack = -2.1  for stack of 77-246
	Helix total = -7.2
	Internal/bulge = 0.4  for closure of 78-245	Size = 1 BP stack across bulge = -3.4
		Stack = -2.1  for stack of 80-244
		Stack = -2.1  for stack of 81-243
		Stack = -2.5  for stack of 82-242
		Stack = -0.5  for stack of 83-241
	Helix total = -7.2
	Internal/bulge = -0.7  for closure of 84-240	Size = 2
		Stack = -1.4  for stack of 86-238
		Stack = -2.4  for stack of 87-237
		Stack = -2.1  for stack of 88-236
	Helix total = -5.9
	Internal/bulge = 2.2  for closure of 89-235	Size = 11
		Stack = -2.1  for stack of 96-229
		Stack = -2.4  for stack of 97-228
		Stack = -2.1  for stack of 98-227
		Stack = -0.9  for stack of 99-226
		Stack = -2.1  for stack of 100-225
		Stack = -2.5  for stack of 101-224
		Stack = -1.0  for stack of 102-223
	Helix total = -13.1
	Internal/bulge = 2.1  for closure of 103-222	Size = 4
	Helix total = 0.0
	Internal/bulge = 5.4  for closure of 106-219	Size = 15
		Stack = -2.5  for stack of 116-212
		Stack = -1.5  for stack of 117-211
		Stack = -2.1  for stack of 118-210
		Stack = 0.3  for stack of 119-209
		Stack = -2.1  for stack of 120-208
	Helix total = -7.9
	Internal/bulge = 4.5  for closure of 121-207	Size = 5
	Helix total = 0.0
	Internal/bulge = 1.2  for closure of 123-202	Size = 2
		Stack = -3.3  for stack of 125-200
		Stack = -2.4  for stack of 126-199
		Stack = -3.4  for stack of 127-198
		Stack = -2.4  for stack of 128-197
	Helix total = -11.5
	Internal/bulge = 1.4  for closure of 129-196	Size = 4
	Helix total = 0.0
	Internal/bulge = 3.8  for closure of 132-193	Size = 2
		Stack = -2.1  for stack of 133-190
		Stack = -3.3  for stack of 134-189
		Stack = -3.3  for stack of 135-188
	Helix total = -8.7
	Internal/bulge = 3.3  for closure of 136-187	Size = 6
		Stack = -2.4  for stack of 139-182
		Stack = -3.3  for stack of 140-181
		Stack = -2.4  for stack of 141-180
		Stack = -2.5  for stack of 142-179
	Helix total = -10.6
	Internal/bulge = 3.2  for closure of 143-178	Size = 8
		Stack = -2.1  for stack of 149-174
		Stack = -2.1  for stack of 150-173
	Helix total = -4.2
	Internal/bulge = 2.4  for closure of 151-172	Size = 10
		Stack = -2.4  for stack of 157-166
		Stack = -3.3  for stack of 158-165
	Helix total = -5.7
	Hairpin = 3.3  for closure of 159-164
		Stack = -3.4  for stack of 11-57
	Helix total = -3.4
	Multiloop = 4.8  for closure of 12-56
		Stack = -2.1  for stack of 35-55
		Stack = -2.4  for stack of 36-54
		Stack = -2.4  for stack of 37-53
	Helix total = -6.9
	Hairpin = 5.7  for closure of 38-52
		Stack = -3.3  for stack of 15-30
	Helix total = -3.3
	Hairpin = 5.2  for closure of 16-29


	Total energy = -61.2



