Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    25:51 26:50 27:49 28:48 29:47
	Energy of Broken Structure: -19.6
	Energy of Pseudo-Helices:   -10.7
	Pseudoknot Energy Penalty:  7.2
	Total Free Energy:          -23.1
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = 0.3
		Stack = -1.0  for stack of 3-266
		Stack = -2.5  for stack of 4-265
		Stack = -3.3  for stack of 5-264
		Stack = -2.4  for stack of 6-263
		Stack = -2.2  for stack of 7-262
		Stack = -2.1  for stack of 8-261
	Helix total = -13.5
	Multiloop = 6.7  for closure of 9-260
		Stack = -3.3  for stack of 68-257
		Stack = -2.1  for stack of 69-256
	Helix total = -5.4
	Internal/bulge = 1.0  for closure of 70-255	Size = 1 BP stack across bulge = -2.4
		Stack = -2.1  for stack of 71-253
	Helix total = -2.1
	Internal/bulge = 1.7  for closure of 72-252	Size = 6
		Stack = -1.5  for stack of 76-248
		Stack = -1.4  for stack of 77-247
		Stack = -0.9  for stack of 78-246
		Stack = -1.3  for stack of 79-245
	Helix total = -5.1
	Internal/bulge = 4.0  for closure of 80-244	Size = 5
		Stack = -1.0  for stack of 84-241
		Stack = -2.5  for stack of 85-240
		Stack = -2.1  for stack of 86-239
		Stack = 0.3  for stack of 87-238
		Stack = -1.4  for stack of 88-237
	Helix total = -6.7
	Internal/bulge = 2.1  for closure of 89-236	Size = 1 BP stack across bulge = -1.3
		Stack = -0.6  for stack of 91-235
	Helix total = -0.6
	Internal/bulge = 2.9  for closure of 92-234	Size = 11
		Stack = -2.1  for stack of 99-228
		Stack = -1.3  for stack of 100-227
		Stack = -1.0  for stack of 101-226
		Stack = -0.9  for stack of 102-225
		Stack = -2.1  for stack of 103-224
		Stack = -2.5  for stack of 104-223
		Stack = -1.0  for stack of 105-222
	Helix total = -10.9
	Internal/bulge = 2.1  for closure of 106-221	Size = 4
	Helix total = 0.0
	Internal/bulge = 5.4  for closure of 109-218	Size = 15
		Stack = -2.2  for stack of 119-211
		Stack = -0.9  for stack of 120-210
		Stack = -1.3  for stack of 121-209
		Stack = 0.3  for stack of 122-208
		Stack = -2.1  for stack of 123-207
	Helix total = -6.2
	Internal/bulge = 4.5  for closure of 124-206	Size = 5
	Helix total = 0.0
	Internal/bulge = 0.1  for closure of 126-201	Size = 1 BP stack across bulge = -2.4
		Stack = -2.1  for stack of 128-200
	Helix total = -2.1
	Internal/bulge = 1.4  for closure of 129-199	Size = 1 BP stack across bulge = -2.4
		Stack = -2.4  for stack of 131-198
	Helix total = -2.4
	Internal/bulge = 1.4  for closure of 132-197	Size = 4
	Helix total = 0.0
	Internal/bulge = 3.3  for closure of 135-194	Size = 2
		Stack = -2.4  for stack of 136-191
		Stack = -1.5  for stack of 137-190
		Stack = -2.1  for stack of 138-189
	Helix total = -6.0
	Internal/bulge = 3.2  for closure of 139-188	Size = 6
		Stack = -3.3  for stack of 142-183
		Stack = -2.4  for stack of 143-182
		Stack = -2.5  for stack of 144-181
	Helix total = -8.2
	Internal/bulge = 3.9  for closure of 145-180	Size = 8
		Stack = -0.9  for stack of 151-176
		Stack = -2.1  for stack of 152-175
	Helix total = -3.0
	Internal/bulge = 2.4  for closure of 153-174	Size = 10
		Stack = -2.4  for stack of 159-168
		Stack = -3.3  for stack of 160-167
	Helix total = -5.7
	Hairpin = 3.3  for closure of 161-166
		Stack = -3.4  for stack of 14-60
	Helix total = -3.4
	Multiloop = 4.8  for closure of 15-59
		Stack = -2.1  for stack of 39-58
	Helix total = -2.1
	Internal/bulge = 1.7  for closure of 40-57	Size = 1 BP stack across bulge = -2.1
	Helix total = 0.0
	Hairpin = 5.7  for closure of 42-56
		Stack = -3.3  for stack of 19-34
	Helix total = -3.3
	Hairpin = 5.2  for closure of 20-33


	Total energy = -19.6



