Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    12:313 13:312 14:311 15:310 16:309 17:308 18:307 59:248
	    60:247 61:246 62:245
	Energy of Broken Structure: -79.9
	Energy of Pseudo-Helices:   -20.7
	Pseudoknot Energy Penalty:  17.6
	Total Free Energy:          -83.0
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -1.2
		Stack = -3.4  for stack of 1-357
		Stack = -2.1  for stack of 2-356
		Stack = -2.1  for stack of 3-355
		Stack = -2.2  for stack of 4-354
		Stack = -1.3  for stack of 5-353
		Stack = 0.3  for stack of 6-352
		Stack = -2.1  for stack of 7-351
		Stack = -3.4  for stack of 8-350
		Stack = -3.3  for stack of 9-349
	Helix total = -19.6
	Internal/bulge = 2.4  for closure of 10-348	Size = 1 BP stack across bulge = -1.4
	Helix total = 0.0
	Multiloop = 6.3  for closure of 11-346
		Stack = -0.9  for stack of 43-344
		Stack = -2.1  for stack of 44-343
	Helix total = -3.0
	Internal/bulge = 0.4  for closure of 45-342	Size = 1 BP stack across bulge = -3.4
		Stack = -3.3  for stack of 47-341
		Stack = -2.4  for stack of 48-340
		Stack = -1.5  for stack of 49-339
		Stack = -2.1  for stack of 50-338
	Helix total = -9.3
	Multiloop = 3.0  for closure of 51-337
		Stack = -2.2  for stack of 314-330
		Stack = -3.3  for stack of 315-329
		Stack = -2.1  for stack of 316-328
		Stack = -0.9  for stack of 317-327
		Stack = -1.3  for stack of 318-326
		Stack = -1.1  for stack of 319-325
	Helix total = -10.9
	Hairpin = 5.9  for closure of 320-324
		Stack = -2.2  for stack of 277-296
		Stack = -2.1  for stack of 278-295
	Helix total = -4.3
	Internal/bulge = 0.5  for closure of 279-294	Size = 2
		Stack = -2.4  for stack of 281-292
		Stack = -2.2  for stack of 282-291
		Stack = -2.1  for stack of 283-290
	Helix total = -6.7
	Hairpin = 3.1  for closure of 284-289
		Stack = -3.3  for stack of 217-270
		Stack = -2.2  for stack of 218-269
		Stack = -2.4  for stack of 219-268
	Helix total = -7.9
	Internal/bulge = 3.4  for closure of 220-267	Size = 13
		Stack = -3.3  for stack of 228-260
		Stack = -2.4  for stack of 229-259
		Stack = -1.5  for stack of 230-258
		Stack = -2.5  for stack of 231-257
		Stack = -1.4  for stack of 232-256
		Stack = -1.4  for stack of 233-255
	Helix total = -12.5
	Internal/bulge = 5.1  for closure of 234-254	Size = 6
		Stack = -2.4  for stack of 240-252
		Stack = -2.1  for stack of 241-251
		Stack = -2.5  for stack of 242-250
	Helix total = -7.0
	Hairpin = 5.6  for closure of 243-249
		Stack = -2.1  for stack of 52-213
		Stack = -0.9  for stack of 53-212
		Stack = -2.2  for stack of 54-211
	Helix total = -5.2
	Internal/bulge = 5.2  for closure of 55-210	Size = 8
		Stack = -2.4  for stack of 64-209
		Stack = -3.3  for stack of 65-208
		Stack = -2.1  for stack of 66-207
		Stack = -1.3  for stack of 67-206
	Helix total = -9.1
	Multiloop = 3.3  for closure of 68-205
		Stack = -2.1  for stack of 100-204
	Helix total = -2.1
	Internal/bulge = 3.3  for closure of 101-203	Size = 2
		Stack = -2.2  for stack of 104-202
	Helix total = -2.2
	Multiloop = 3.8  for closure of 105-201
	Helix total = 0.0
	Internal/bulge = 1.2  for closure of 176-193	Size = 2
		Stack = -2.5  for stack of 178-191
		Stack = -2.1  for stack of 179-190
		Stack = -1.1  for stack of 180-189
		Stack = -2.1  for stack of 181-188
	Helix total = -7.8
	Hairpin = 3.1  for closure of 182-187
		Stack = -3.3  for stack of 155-173
		Stack = -2.2  for stack of 156-172
		Stack = -1.0  for stack of 157-171
		Stack = -2.1  for stack of 158-170
		Stack = -3.3  for stack of 159-169
	Helix total = -11.9
	Hairpin = 3.8  for closure of 160-168
		Stack = -3.3  for stack of 120-147
	Helix total = -3.3
	Internal/bulge = 3.3  for closure of 121-146	Size = 2
		Stack = -2.5  for stack of 122-143
		Stack = -3.3  for stack of 123-142
	Helix total = -5.8
	Internal/bulge = -0.1  for closure of 124-141	Size = 2
		Stack = -2.1  for stack of 126-139
		Stack = -2.4  for stack of 127-138
		Stack = -3.3  for stack of 128-137
		Stack = -2.1  for stack of 129-136
	Helix total = -9.9
	Hairpin = 5.4  for closure of 130-135
		Stack = -2.1  for stack of 84-99
		Stack = -1.0  for stack of 85-98
		Stack = 1.3  for stack of 86-97
		Stack = -1.5  for stack of 87-96
		Stack = -3.3  for stack of 88-95
	Helix total = -6.6
	Hairpin = 3.3  for closure of 89-94
		Stack = -2.1  for stack of 69-83
		Stack = -0.9  for stack of 70-82
	Helix total = -3.0
	Internal/bulge = 1.2  for closure of 71-81	Size = 2
	Helix total = 0.0
	Hairpin = 4.7  for closure of 73-79
	Helix total = 0.0
	Internal/bulge = -1.4  for closure of 20-38	Size = 2
		Stack = -2.1  for stack of 22-36
		Stack = -3.4  for stack of 23-35
		Stack = -1.4  for stack of 24-34
		Stack = -2.5  for stack of 25-33
		Stack = -2.4  for stack of 26-32
	Helix total = -11.8
	Hairpin = 5.4  for closure of 27-31


	Total energy = -79.9



