Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    157:208 159:207 160:206 161:205 162:204 163:203
	Energy of Broken Structure: -59.7
	Energy of Pseudo-Helices:   -9.1
	Pseudoknot Energy Penalty:  7.6
	Total Free Energy:          -61.2
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -5.5
		Stack = -1.1  for stack of 210-251
		Stack = -0.9  for stack of 211-250
		Stack = -2.4  for stack of 212-249
		Stack = -2.1  for stack of 213-248
		Stack = -2.4  for stack of 214-247
	Helix total = -8.9
	Multiloop = 3.3  for closure of 215-246
		Stack = -2.5  for stack of 230-243
		Stack = -1.0  for stack of 231-242
		Stack = -2.1  for stack of 232-241
		Stack = -3.4  for stack of 233-240
	Helix total = -9.0
	Hairpin = 3.3  for closure of 234-239
		Stack = -3.4  for stack of 219-228
		Stack = -3.3  for stack of 220-227
	Helix total = -6.7
	Hairpin = 4.1  for closure of 221-226
		Stack = -1.3  for stack of 173-196
		Stack = -2.2  for stack of 174-195
		Stack = -3.3  for stack of 175-194
		Stack = -3.3  for stack of 176-193
		Stack = -2.1  for stack of 177-192
	Helix total = -12.2
	Internal/bulge = 3.3  for closure of 178-191	Size = 2
		Stack = -2.4  for stack of 181-190
		Stack = -2.2  for stack of 182-189
	Helix total = -4.6
	Hairpin = 5.4  for closure of 183-188
		Stack = -3.4  for stack of 43-172
		Stack = -2.1  for stack of 44-171
		Stack = -2.4  for stack of 45-170
		Stack = -2.1  for stack of 46-169
		Stack = -1.5  for stack of 47-168
	Helix total = -11.5
	Multiloop = 8.6  for closure of 48-167
		Stack = -2.5  for stack of 94-153
		Stack = -3.3  for stack of 95-152
	Helix total = -5.8
	Internal/bulge = 2.6  for closure of 96-151	Size = 5
		Stack = -3.3  for stack of 100-148
		Stack = -2.4  for stack of 101-147
	Helix total = -5.7
	Internal/bulge = 2.6  for closure of 102-146	Size = 5
		Stack = -1.3  for stack of 106-143
		Stack = -2.1  for stack of 107-142
	Helix total = -3.4
	Internal/bulge = 3.7  for closure of 108-141	Size = 3
		Stack = -0.6  for stack of 112-140
	Helix total = -0.6
	Internal/bulge = 1.7  for closure of 113-139	Size = 1 BP stack across bulge = -2.1
		Stack = -2.2  for stack of 115-138
		Stack = -1.3  for stack of 116-137
		Stack = -0.9  for stack of 117-136
		Stack = -2.1  for stack of 118-135
		Stack = -2.2  for stack of 119-134
		Stack = -0.9  for stack of 120-133
		Stack = -1.3  for stack of 121-132
	Helix total = -10.9
	Hairpin = 5.2  for closure of 122-131
		Stack = -2.4  for stack of 53-93
		Stack = -2.1  for stack of 54-92
		Stack = -2.1  for stack of 55-91
		Stack = -3.3  for stack of 56-90
		Stack = -1.5  for stack of 57-89
	Helix total = -11.4
	Internal/bulge = 2.7  for closure of 58-88	Size = 6
		Stack = -3.3  for stack of 62-84
		Stack = -2.1  for stack of 63-83
	Helix total = -5.4
	Internal/bulge = 4.0  for closure of 64-82	Size = 5
		Stack = -2.4  for stack of 68-79
		Stack = -2.1  for stack of 69-78
		Stack = -1.3  for stack of 70-77
	Helix total = -5.8
	Hairpin = 4.4  for closure of 71-76
		Stack = -2.1  for stack of 16-37
		Stack = -0.9  for stack of 17-36
		Stack = -1.3  for stack of 18-35
		Stack = -0.6  for stack of 19-34
		Stack = -1.3  for stack of 20-33
		Stack = -2.1  for stack of 21-32
		Stack = -2.4  for stack of 22-31
		Stack = -0.9  for stack of 23-30
	Helix total = -11.6
	Hairpin = 4.4  for closure of 24-29
		Stack = -2.1  for stack of 1-14
		Stack = -1.3  for stack of 2-13
		Stack = -1.0  for stack of 3-12
		Stack = -0.9  for stack of 4-11
	Helix total = -5.3
	Hairpin = 5.3  for closure of 5-10


	Total energy = -59.7



