Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    49:67 50:66 51:65 52:64 53:63 159:197 160:196 161:195
	    162:194 163:193 215:247 216:246 217:245 218:244 219:243 265:302
	    266:301 267:300 268:299 269:297 270:296 271:295
	Energy of Broken Structure: -68.8
	Energy of Pseudo-Helices:   -36.7
	Pseudoknot Energy Penalty:  33.9
	Total Free Energy:          -71.6
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -1.7
		Stack = -3.3  for stack of 1-362
		Stack = -1.5  for stack of 2-361
		Stack = -2.1  for stack of 3-360
		Stack = -3.4  for stack of 4-359
		Stack = -2.1  for stack of 5-358
		Stack = -2.1  for stack of 6-357
	Helix total = -14.5
	Multiloop = 5.2  for closure of 7-356
		Stack = -3.3  for stack of 339-355
		Stack = -3.3  for stack of 340-354
		Stack = -3.3  for stack of 341-353
		Stack = -3.3  for stack of 342-352
	Helix total = -13.2
	Hairpin = 4.4  for closure of 343-351
		Stack = -2.4  for stack of 21-335
		Stack = -1.5  for stack of 22-334
		Stack = -0.5  for stack of 23-333
		Stack = -1.3  for stack of 24-332
		Stack = -1.1  for stack of 25-331
		Stack = -0.9  for stack of 26-330
		Stack = -1.3  for stack of 27-329
	Helix total = -9.0
	Internal/bulge = 2.4  for closure of 28-328	Size = 9
		Stack = -1.4  for stack of 34-323
		Stack = -2.4  for stack of 35-322
	Helix total = -3.8
	Internal/bulge = 1.7  for closure of 36-321	Size = 6
		Stack = -2.1  for stack of 40-317
		Stack = -2.5  for stack of 41-316
		Stack = 0.3  for stack of 42-315
	Helix total = -4.3
	Internal/bulge = 3.7  for closure of 43-314	Size = 3
		Stack = -2.1  for stack of 44-310
		Stack = -2.2  for stack of 45-309
		Stack = -2.4  for stack of 46-308
		Stack = -2.2  for stack of 47-307
	Helix total = -8.9
	Multiloop = 6.1  for closure of 48-306
		Stack = -2.5  for stack of 250-285
		Stack = -2.1  for stack of 251-284
		Stack = -0.9  for stack of 252-283
		Stack = -1.3  for stack of 253-282
		Stack = -1.4  for stack of 254-281
		Stack = -0.5  for stack of 255-280
		Stack = -0.6  for stack of 256-279
		Stack = -2.4  for stack of 257-278
		Stack = -2.1  for stack of 258-277
	Helix total = -13.8
	Internal/bulge = 1.1  for closure of 259-276	Size = 2
		Stack = -3.4  for stack of 261-274
		Stack = -2.4  for stack of 262-273
	Helix total = -5.8
	Hairpin = 4.5  for closure of 263-272
		Stack = -2.1  for stack of 202-231
		Stack = -2.2  for stack of 203-230
	Helix total = -4.3
	Internal/bulge = 2.1  for closure of 204-229	Size = 11
		Stack = -3.3  for stack of 210-222
	Helix total = -3.3
	Hairpin = 4.1  for closure of 211-221
		Stack = -2.1  for stack of 140-183
		Stack = -0.9  for stack of 141-182
		Stack = -1.3  for stack of 142-181
		Stack = -1.1  for stack of 143-180
		Stack = -2.4  for stack of 144-179
		Stack = -2.4  for stack of 145-178
	Helix total = -10.2
	Internal/bulge = 3.6  for closure of 146-177	Size = 4
		Stack = -3.3  for stack of 147-172
		Stack = -2.1  for stack of 148-171
		Stack = -2.4  for stack of 149-170
	Helix total = -7.8
	Internal/bulge = 0.3  for closure of 150-169	Size = 4
		Stack = -2.1  for stack of 153-166
		Stack = -0.9  for stack of 154-165
	Helix total = -3.0
	Hairpin = 5.5  for closure of 155-164
		Stack = -3.4  for stack of 110-139
		Stack = -2.1  for stack of 111-138
	Helix total = -5.5
	Internal/bulge = 1.5  for closure of 112-137	Size = 2
	Helix total = 0.0
	Internal/bulge = 3.0  for closure of 114-135	Size = 3
		Stack = -3.4  for stack of 116-132
		Stack = -2.1  for stack of 117-131
		Stack = -2.1  for stack of 118-130
	Helix total = -7.6
	Hairpin = 5.7  for closure of 119-129
		Stack = -2.1  for stack of 54-80
		Stack = -3.4  for stack of 55-79
		Stack = -2.4  for stack of 56-78
		Stack = -3.3  for stack of 57-77
		Stack = -2.2  for stack of 58-76
	Helix total = -13.4
	Hairpin = 6.4  for closure of 59-75


	Total energy = -68.8



