Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    81:135 82:134 83:133 84:132 85:131 86:130 87:128 88:127
	    89:126
	Energy of Broken Structure: -117.6
	Energy of Pseudo-Helices:   -14.0
	Pseudoknot Energy Penalty:  8.5
	Total Free Energy:          -123.1
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -3.5
		Stack = -2.4  for stack of 323-389
		Stack = -2.1  for stack of 324-388
		Stack = -3.4  for stack of 325-387
		Stack = -3.3  for stack of 326-386
	Helix total = -11.2
	Internal/bulge = 1.3  for closure of 327-385	Size = 4
		Stack = -3.4  for stack of 330-382
		Stack = -2.1  for stack of 331-381
		Stack = -2.1  for stack of 332-380
	Helix total = -7.6
	Internal/bulge = 6.1  for closure of 333-379	Size = 18
		Stack = -2.1  for stack of 347-373
		Stack = -2.2  for stack of 348-372
		Stack = -2.1  for stack of 349-371
		Stack = 0.3  for stack of 350-370
	Helix total = -6.1
	Internal/bulge = 0.9  for closure of 351-369	Size = 1 BP stack across bulge = -2.5
		Stack = -3.3  for stack of 352-367
		Stack = -3.3  for stack of 353-366
		Stack = -3.3  for stack of 354-365
	Helix total = -9.9
	Hairpin = 3.4  for closure of 355-364
		Stack = -2.1  for stack of 161-309
		Stack = -2.1  for stack of 162-308
		Stack = -3.4  for stack of 163-307
		Stack = -3.3  for stack of 164-306
	Helix total = -10.9
	Internal/bulge = 5.3  for closure of 165-305	Size = 15
		Stack = -3.4  for stack of 177-300
		Stack = -2.4  for stack of 178-299
		Stack = -3.3  for stack of 179-298
		Stack = -3.4  for stack of 180-297
		Stack = -3.3  for stack of 181-296
		Stack = -2.1  for stack of 182-295
		Stack = -2.4  for stack of 183-294
		Stack = -2.1  for stack of 184-293
	Helix total = -22.4
	Internal/bulge = 4.2  for closure of 185-292	Size = 20
		Stack = -3.3  for stack of 197-282
		Stack = -2.4  for stack of 198-281
		Stack = -3.4  for stack of 199-280
		Stack = -2.1  for stack of 200-279
		Stack = -2.1  for stack of 201-278
		Stack = -3.4  for stack of 202-277
		Stack = -2.4  for stack of 203-276
		Stack = -3.4  for stack of 204-275
		Stack = -3.3  for stack of 205-274
	Helix total = -25.8
	Multiloop = 6.1  for closure of 206-273
		Stack = -2.1  for stack of 250-262
		Stack = -2.4  for stack of 251-261
		Stack = -2.1  for stack of 252-260
	Helix total = -6.6
	Hairpin = 5.2  for closure of 253-259
		Stack = -2.4  for stack of 219-248
		Stack = -3.4  for stack of 220-247
	Helix total = -5.8
	Internal/bulge = 0.5  for closure of 221-246	Size = 2
	Helix total = 0.0
	Internal/bulge = 0.4  for closure of 223-244	Size = 1 BP stack across bulge = -3.4
		Stack = -2.1  for stack of 225-243
		Stack = -2.1  for stack of 226-242
		Stack = -3.4  for stack of 227-241
	Helix total = -7.6
	Hairpin = 5.6  for closure of 228-240
		Stack = -3.4  for stack of 4-156
		Stack = -2.4  for stack of 5-155
		Stack = -3.3  for stack of 6-154
		Stack = -2.5  for stack of 7-153
	Helix total = -11.6
	Internal/bulge = 1.9  for closure of 8-152	Size = 2
		Stack = -1.1  for stack of 10-150
		Stack = -1.3  for stack of 11-149
		Stack = -2.1  for stack of 12-148
		Stack = -3.3  for stack of 13-147
		Stack = -2.4  for stack of 14-146
		Stack = -0.6  for stack of 15-145
		Stack = -1.3  for stack of 16-144
		Stack = -2.1  for stack of 17-143
	Helix total = -14.2
	Internal/bulge = 0.9  for closure of 18-142	Size = 1 BP stack across bulge = -2.5
		Stack = -1.5  for stack of 20-141
		Stack = -2.1  for stack of 21-140
		Stack = -1.3  for stack of 22-139
	Helix total = -4.9
	Internal/bulge = 5.2  for closure of 23-138	Size = 64
		Stack = -3.4  for stack of 56-105
		Stack = -2.1  for stack of 57-104
		Stack = -2.4  for stack of 58-103
		Stack = -2.1  for stack of 59-102
	Helix total = -10.0
	Internal/bulge = 4.0  for closure of 60-101	Size = 5
		Stack = -1.4  for stack of 64-98
		Stack = -3.4  for stack of 65-97
		Stack = -2.1  for stack of 66-96
		Stack = -1.5  for stack of 67-95
		Stack = -2.4  for stack of 68-94
		Stack = -2.5  for stack of 69-93
		Stack = -0.6  for stack of 70-92
		Stack = -2.1  for stack of 71-91
	Helix total = -16.0
	Hairpin = 5.5  for closure of 72-90


	Total energy = -117.6



