Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    107:183 108:182 109:181 110:180 111:179 112:178 113:176 114:175
	    115:174
	Energy of Broken Structure: -126.7
	Energy of Pseudo-Helices:   -14.0
	Pseudoknot Energy Penalty:  8.7
	Total Free Energy:          -132.0
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -4.6
		Stack = -2.4  for stack of 372-435
		Stack = -2.1  for stack of 373-434
		Stack = -2.5  for stack of 374-433
	Helix total = -7.0
	Internal/bulge = -1.4  for closure of 375-432	Size = 2
		Stack = -1.5  for stack of 377-430
		Stack = -2.1  for stack of 378-429
		Stack = -2.2  for stack of 379-428
		Stack = -2.4  for stack of 380-427
		Stack = -3.3  for stack of 381-426
		Stack = -3.3  for stack of 382-425
	Helix total = -14.8
	Internal/bulge = 5.5  for closure of 383-424	Size = 10
		Stack = -2.2  for stack of 392-421
		Stack = -2.1  for stack of 393-420
		Stack = -3.4  for stack of 394-419
		Stack = -1.4  for stack of 395-418
	Helix total = -9.1
	Internal/bulge = 2.9  for closure of 396-417	Size = 4
		Stack = -2.4  for stack of 399-414
		Stack = -3.3  for stack of 400-413
		Stack = -3.3  for stack of 401-412
	Helix total = -9.0
	Hairpin = 3.4  for closure of 402-411
		Stack = -3.3  for stack of 211-361
		Stack = -2.1  for stack of 212-360
		Stack = -2.1  for stack of 213-359
		Stack = -3.4  for stack of 214-358
		Stack = -2.4  for stack of 215-357
		Stack = -3.3  for stack of 216-356
	Helix total = -16.6
	Internal/bulge = 3.2  for closure of 217-355	Size = 11
		Stack = -3.4  for stack of 224-349
		Stack = -3.3  for stack of 225-348
	Helix total = -6.7
	Internal/bulge = 2.3  for closure of 226-347	Size = 3
	Helix total = 0.0
	Internal/bulge = -1.1  for closure of 228-344	Size = 1 BP stack across bulge = -3.4
		Stack = -3.3  for stack of 230-343
	Helix total = -3.3
	Internal/bulge = 2.9  for closure of 231-342	Size = 7
		Stack = -3.3  for stack of 234-336
	Helix total = -3.3
	Internal/bulge = 0.5  for closure of 235-335	Size = 1 BP stack across bulge = -3.3
		Stack = -3.3  for stack of 236-333
	Helix total = -3.3
	Internal/bulge = 1.4  for closure of 237-332	Size = 1 BP stack across bulge = -2.4
	Helix total = 0.0
	Internal/bulge = 2.9  for closure of 239-331	Size = 8
		Stack = -3.3  for stack of 243-325
		Stack = -3.3  for stack of 244-324
		Stack = -2.4  for stack of 245-323
		Stack = -3.4  for stack of 246-322
	Helix total = -12.4
	Multiloop = 5.7  for closure of 247-321
		Stack = -2.1  for stack of 301-313
		Stack = -2.4  for stack of 302-312
		Stack = -2.1  for stack of 303-311
		Stack = -2.5  for stack of 304-310
	Helix total = -9.1
	Hairpin = 5.9  for closure of 305-309
		Stack = -1.4  for stack of 255-299
		Stack = -2.5  for stack of 256-298
		Stack = -2.4  for stack of 257-297
		Stack = -3.3  for stack of 258-296
	Helix total = -9.6
	Internal/bulge = 0.4  for closure of 259-295	Size = 1 BP stack across bulge = -3.4
		Stack = -2.4  for stack of 261-294
		Stack = -3.3  for stack of 262-293
		Stack = -3.4  for stack of 263-292
	Helix total = -9.1
	Internal/bulge = 2.6  for closure of 264-291	Size = 5
		Stack = -3.3  for stack of 267-287
	Helix total = -3.3
	Hairpin = 5.5  for closure of 268-286
		Stack = -3.3  for stack of 18-208
		Stack = -3.3  for stack of 19-207
	Helix total = -6.6
	Internal/bulge = 0.5  for closure of 20-206	Size = 2
		Stack = -3.3  for stack of 22-204
		Stack = -1.5  for stack of 23-203
	Helix total = -4.8
	Internal/bulge = 1.5  for closure of 24-202	Size = 4
		Stack = -3.3  for stack of 27-199
		Stack = -2.2  for stack of 28-198
		Stack = -2.1  for stack of 29-197
		Stack = -1.5  for stack of 30-196
	Helix total = -9.1
	Internal/bulge = 3.7  for closure of 31-195	Size = 4
		Stack = -2.1  for stack of 33-191
		Stack = -3.4  for stack of 34-190
		Stack = -3.3  for stack of 35-189
		Stack = -2.1  for stack of 36-188
	Helix total = -10.9
	Internal/bulge = 8.2  for closure of 37-187	Size = 67
		Stack = -3.3  for stack of 64-145
		Stack = -3.4  for stack of 65-144
		Stack = -2.4  for stack of 66-143
	Helix total = -9.1
	Internal/bulge = 0.3  for closure of 67-142	Size = 1 BP stack across bulge = -2.2
		Stack = -1.3  for stack of 68-140
		Stack = -2.1  for stack of 69-139
		Stack = -3.3  for stack of 70-138
		Stack = -3.4  for stack of 71-137
	Helix total = -10.1
	Internal/bulge = 2.0  for closure of 72-136	Size = 9
		Stack = -3.4  for stack of 78-131
		Stack = -2.1  for stack of 79-130
		Stack = -0.9  for stack of 80-129
		Stack = -0.9  for stack of 81-128
	Helix total = -7.3
	Internal/bulge = 6.1  for closure of 82-127	Size = 9
		Stack = -2.4  for stack of 90-124
		Stack = -3.4  for stack of 91-123
	Helix total = -5.8
	Internal/bulge = -2.2  for closure of 92-122	Size = 2
		Stack = -2.4  for stack of 94-120
		Stack = -3.4  for stack of 95-119
		Stack = -2.1  for stack of 96-118
		Stack = -2.1  for stack of 97-117
	Helix total = -10.0
	Hairpin = 5.5  for closure of 98-116


	Total energy = -126.7



