Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    112:197 113:196 114:195 115:192 116:191 117:190 118:188 119:187
	    120:186
	Energy of Broken Structure: -106.9
	Energy of Pseudo-Helices:   -10.4
	Pseudoknot Energy Penalty:  8.3
	Total Free Energy:          -109.0
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -4.0
		Stack = -2.4  for stack of 420-483
		Stack = -2.2  for stack of 421-482
		Stack = -3.3  for stack of 422-481
		Stack = -2.1  for stack of 423-480
		Stack = -2.1  for stack of 424-479
	Helix total = -12.1
	Internal/bulge = 0.4  for closure of 425-478	Size = 1 BP stack across bulge = -3.4
		Stack = -2.4  for stack of 427-477
		Stack = -3.4  for stack of 428-476
	Helix total = -5.8
	Internal/bulge = 6.2  for closure of 429-475	Size = 17
		Stack = -2.1  for stack of 442-469
		Stack = -3.4  for stack of 443-468
		Stack = -2.1  for stack of 444-467
	Helix total = -7.6
	Internal/bulge = 2.4  for closure of 445-466	Size = 4
		Stack = -2.4  for stack of 448-463
		Stack = -3.3  for stack of 449-462
		Stack = -3.3  for stack of 450-461
	Helix total = -9.0
	Hairpin = 4.0  for closure of 451-460
		Stack = -3.3  for stack of 228-404
		Stack = -2.1  for stack of 229-403
		Stack = -2.1  for stack of 230-402
		Stack = -2.2  for stack of 231-401
		Stack = -1.3  for stack of 232-400
	Helix total = -11.0
	Internal/bulge = 6.1  for closure of 233-399	Size = 24
		Stack = -2.5  for stack of 252-392
		Stack = -3.3  for stack of 253-391
		Stack = -2.1  for stack of 254-390
		Stack = -1.5  for stack of 255-389
		Stack = -2.4  for stack of 256-388
		Stack = -1.5  for stack of 257-387
		Stack = -2.5  for stack of 258-386
		Stack = -3.3  for stack of 259-385
		Stack = -3.3  for stack of 260-384
	Helix total = -22.4
	Internal/bulge = 6.1  for closure of 261-383	Size = 18
		Stack = -3.4  for stack of 274-376
		Stack = -2.1  for stack of 275-375
		Stack = -1.4  for stack of 276-374
	Helix total = -6.9
	Internal/bulge = -1.4  for closure of 277-373	Size = 2
		Stack = -3.3  for stack of 279-371
		Stack = -3.3  for stack of 280-370
	Helix total = -6.6
	Internal/bulge = 0.9  for closure of 281-369	Size = 2
		Stack = -3.4  for stack of 283-367
		Stack = -3.3  for stack of 284-366
		Stack = -1.4  for stack of 285-365
	Helix total = -8.1
	Multiloop = 6.3  for closure of 286-364
		Stack = -2.1  for stack of 344-356
		Stack = -2.4  for stack of 345-355
		Stack = -2.1  for stack of 346-354
	Helix total = -6.6
	Hairpin = 4.1  for closure of 347-353
		Stack = -2.4  for stack of 294-342
		Stack = -3.4  for stack of 295-341
		Stack = -2.4  for stack of 296-340
		Stack = -1.5  for stack of 297-339
	Helix total = -9.7
	Internal/bulge = 1.3  for closure of 298-338	Size = 1 BP stack across bulge = -2.5
		Stack = -2.1  for stack of 300-337
		Stack = -2.1  for stack of 301-336
		Stack = -3.4  for stack of 302-335
	Helix total = -7.6
	Internal/bulge = 1.4  for closure of 303-334	Size = 4
		Stack = -1.4  for stack of 306-331
		Stack = -0.5  for stack of 307-330
	Helix total = -1.9
	Hairpin = 7.0  for closure of 308-329
		Stack = -2.2  for stack of 1-225
		Stack = -2.4  for stack of 2-224
		Stack = -3.3  for stack of 3-223
	Helix total = -7.9
	Internal/bulge = 2.3  for closure of 4-222	Size = 4
		Stack = -3.4  for stack of 6-218
		Stack = -2.1  for stack of 7-217
		Stack = -1.4  for stack of 8-216
		Stack = -3.4  for stack of 9-215
	Helix total = -10.3
	Internal/bulge = 1.0  for closure of 10-214	Size = 1 BP stack across bulge = -2.4
		Stack = -3.3  for stack of 11-212
		Stack = -3.3  for stack of 12-211
		Stack = -3.3  for stack of 13-210
		Stack = -2.4  for stack of 14-209
		Stack = -2.1  for stack of 15-208
	Helix total = -14.4
	Internal/bulge = 8.0  for closure of 16-207	Size = 109
		Stack = -3.3  for stack of 57-137
		Stack = -3.3  for stack of 58-136
		Stack = -2.1  for stack of 59-135
		Stack = -0.9  for stack of 60-134
	Helix total = -9.6
	Internal/bulge = 7.5  for closure of 61-133	Size = 36
		Stack = -3.3  for stack of 95-129
	Helix total = -3.3
	Internal/bulge = 1.2  for closure of 96-128	Size = 2
		Stack = -2.4  for stack of 98-126
		Stack = -2.4  for stack of 99-125
		Stack = -3.4  for stack of 100-124
		Stack = -2.1  for stack of 101-123
		Stack = -2.1  for stack of 102-122
	Helix total = -12.4
	Hairpin = 5.5  for closure of 103-121


	Total energy = -106.9



