Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    92:155 93:154 94:153 95:152 96:151 97:150 98:148 99:147
	    100:146
	Energy of Broken Structure: -108.0
	Energy of Pseudo-Helices:   -11.7
	Pseudoknot Energy Penalty:  8.8
	Total Free Energy:          -110.9
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -5.0
		Stack = -2.4  for stack of 375-437
		Stack = -0.9  for stack of 376-436
		Stack = -2.2  for stack of 377-435
	Helix total = -5.5
	Internal/bulge = 0.4  for closure of 378-434	Size = 2
	Helix total = 0.0
	Internal/bulge = 1.0  for closure of 380-432	Size = 1 BP stack across bulge = -1.5
		Stack = -0.5  for stack of 381-430
		Stack = 1.3  for stack of 382-429
		Stack = 0.3  for stack of 383-428
		Stack = -2.5  for stack of 384-427
	Helix total = -1.4
	Internal/bulge = 6.4  for closure of 385-426	Size = 12
		Stack = -2.4  for stack of 395-422
		Stack = -2.4  for stack of 396-421
		Stack = -3.4  for stack of 397-420
		Stack = -1.4  for stack of 398-419
	Helix total = -9.6
	Internal/bulge = 3.8  for closure of 399-418	Size = 2
		Stack = -2.4  for stack of 400-415
		Stack = -3.3  for stack of 401-414
		Stack = -3.3  for stack of 402-413
	Helix total = -9.0
	Hairpin = 3.4  for closure of 403-412
		Stack = -3.3  for stack of 180-360
		Stack = -3.3  for stack of 181-359
		Stack = -2.4  for stack of 182-358
		Stack = -3.4  for stack of 183-357
		Stack = -2.4  for stack of 184-356
		Stack = -3.4  for stack of 185-355
	Helix total = -18.2
	Internal/bulge = 6.4  for closure of 186-354	Size = 23
		Stack = -2.4  for stack of 203-346
		Stack = -1.5  for stack of 204-345
		Stack = -2.1  for stack of 205-344
		Stack = -3.4  for stack of 206-343
		Stack = -3.3  for stack of 207-342
		Stack = -3.3  for stack of 208-341
		Stack = -2.4  for stack of 209-340
		Stack = -2.5  for stack of 210-339
		Stack = -0.5  for stack of 211-338
	Helix total = -21.4
	Internal/bulge = 1.9  for closure of 212-337	Size = 2
	Helix total = 0.0
	Internal/bulge = 4.1  for closure of 214-335	Size = 13
		Stack = -3.3  for stack of 222-328
		Stack = -2.1  for stack of 223-327
		Stack = -1.4  for stack of 224-326
		Stack = -3.3  for stack of 225-325
		Stack = -3.4  for stack of 226-324
		Stack = -3.3  for stack of 227-323
	Helix total = -16.8
	Internal/bulge = -0.1  for closure of 228-322	Size = 2
		Stack = -3.3  for stack of 230-320
		Stack = -2.1  for stack of 231-319
		Stack = -2.4  for stack of 232-318
		Stack = -1.4  for stack of 233-317
	Helix total = -9.2
	Multiloop = 6.9  for closure of 234-316
		Stack = -2.1  for stack of 295-307
		Stack = -2.4  for stack of 296-306
		Stack = -2.1  for stack of 297-305
	Helix total = -6.6
	Hairpin = 4.7  for closure of 298-304
		Stack = -2.4  for stack of 245-293
		Stack = -3.4  for stack of 246-292
		Stack = -2.4  for stack of 247-291
		Stack = -3.3  for stack of 248-290
	Helix total = -11.5
	Internal/bulge = 0.4  for closure of 249-289	Size = 1 BP stack across bulge = -3.4
		Stack = -2.1  for stack of 251-288
		Stack = -2.1  for stack of 252-287
		Stack = -3.4  for stack of 253-286
	Helix total = -7.6
	Internal/bulge = 2.3  for closure of 254-285	Size = 5
		Stack = -3.3  for stack of 257-281
		Stack = -1.5  for stack of 258-280
	Helix total = -4.8
	Hairpin = 4.8  for closure of 259-279
		Stack = -2.1  for stack of 2-179
		Stack = -2.4  for stack of 3-178
		Stack = -2.1  for stack of 4-177
		Stack = -2.4  for stack of 5-176
	Helix total = -9.0
	Internal/bulge = 3.0  for closure of 6-175	Size = 4
		Stack = -0.5  for stack of 8-171
		Stack = -1.3  for stack of 9-170
	Helix total = -1.8
	Internal/bulge = 3.3  for closure of 10-169	Size = 2
		Stack = -3.3  for stack of 13-168
		Stack = -3.3  for stack of 14-167
		Stack = -1.5  for stack of 15-166
		Stack = -2.5  for stack of 16-165
		Stack = -2.4  for stack of 17-164
	Helix total = -13.0
	Internal/bulge = 1.2  for closure of 18-163	Size = 2
		Stack = -1.3  for stack of 20-161
		Stack = -0.5  for stack of 21-160
		Stack = -1.5  for stack of 22-159
	Helix total = -3.3
	Internal/bulge = 6.1  for closure of 23-158	Size = 76
		Stack = -3.4  for stack of 60-117
		Stack = -2.1  for stack of 61-116
		Stack = -2.4  for stack of 62-115
		Stack = -2.1  for stack of 63-114
	Helix total = -10.0
	Internal/bulge = 6.6  for closure of 64-113	Size = 15
		Stack = -3.4  for stack of 76-108
		Stack = -2.1  for stack of 77-107
		Stack = -2.4  for stack of 78-106
		Stack = -2.1  for stack of 79-105
		Stack = -2.2  for stack of 80-104
		Stack = -2.1  for stack of 81-103
		Stack = -2.1  for stack of 82-102
	Helix total = -16.4
	Hairpin = 5.5  for closure of 83-101


	Total energy = -108.0



