Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    108:189 109:188 110:187 111:184 112:183 113:182 114:180 115:179
	    116:178
	Energy of Broken Structure: -136.2
	Energy of Pseudo-Helices:   -10.4
	Pseudoknot Energy Penalty:  8.6
	Total Free Energy:          -138.0
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -4.8
		Stack = -2.4  for stack of 491-551
		Stack = -2.2  for stack of 492-550
		Stack = -3.3  for stack of 493-549
		Stack = -2.1  for stack of 494-548
		Stack = -2.1  for stack of 495-547
	Helix total = -12.1
	Internal/bulge = 0.5  for closure of 496-546	Size = 1 BP stack across bulge = -3.3
		Stack = -3.3  for stack of 498-545
		Stack = -2.5  for stack of 499-544
	Helix total = -5.8
	Internal/bulge = 6.7  for closure of 500-543	Size = 14
		Stack = -2.1  for stack of 510-537
		Stack = -3.4  for stack of 511-536
		Stack = -2.4  for stack of 512-535
	Helix total = -7.9
	Internal/bulge = 1.7  for closure of 513-534	Size = 4
		Stack = -2.4  for stack of 516-531
		Stack = -3.3  for stack of 517-530
		Stack = -3.3  for stack of 518-529
	Helix total = -9.0
	Hairpin = 4.0  for closure of 519-528
		Stack = -3.3  for stack of 235-474
		Stack = -2.1  for stack of 236-473
		Stack = -2.1  for stack of 237-472
		Stack = -3.4  for stack of 238-471
		Stack = -2.4  for stack of 239-470
		Stack = -3.3  for stack of 240-469
	Helix total = -16.6
	Internal/bulge = 5.8  for closure of 241-468	Size = 89
		Stack = -2.5  for stack of 288-424
		Stack = -1.5  for stack of 289-423
		Stack = -2.4  for stack of 290-422
		Stack = -3.3  for stack of 291-421
		Stack = -2.5  for stack of 292-420
		Stack = -1.5  for stack of 293-419
		Stack = -3.3  for stack of 294-418
		Stack = -3.3  for stack of 295-417
	Helix total = -20.3
	Internal/bulge = 5.3  for closure of 296-416	Size = 18
		Stack = -3.3  for stack of 309-409
		Stack = -3.4  for stack of 310-408
		Stack = -3.3  for stack of 311-407
		Stack = -3.3  for stack of 312-406
		Stack = -2.1  for stack of 313-405
		Stack = -2.1  for stack of 314-404
		Stack = -3.4  for stack of 315-403
		Stack = -3.3  for stack of 316-402
	Helix total = -24.2
	Multiloop = 5.3  for closure of 317-401
		Stack = -2.1  for stack of 380-392
		Stack = -2.4  for stack of 381-391
		Stack = -2.1  for stack of 382-390
		Stack = -2.5  for stack of 383-389
	Helix total = -9.1
	Hairpin = 5.9  for closure of 384-388
		Stack = -2.4  for stack of 327-378
		Stack = -3.4  for stack of 328-377
		Stack = -2.4  for stack of 329-376
		Stack = -3.3  for stack of 330-375
	Helix total = -11.5
	Internal/bulge = 0.4  for closure of 331-374	Size = 1 BP stack across bulge = -3.4
		Stack = -2.1  for stack of 333-373
		Stack = -2.1  for stack of 334-372
		Stack = -3.4  for stack of 335-371
	Helix total = -7.6
	Internal/bulge = 2.6  for closure of 336-370	Size = 5
		Stack = -3.3  for stack of 339-366
		Stack = -3.3  for stack of 340-365
	Helix total = -6.6
	Hairpin = 5.1  for closure of 341-364
		Stack = -2.1  for stack of 4-215
	Helix total = -2.1
	Internal/bulge = 3.0  for closure of 5-214	Size = 3
		Stack = -3.4  for stack of 8-212
		Stack = -2.1  for stack of 9-211
		Stack = -1.4  for stack of 10-210
		Stack = -3.4  for stack of 11-209
		Stack = -2.4  for stack of 12-208
		Stack = -3.3  for stack of 13-207
		Stack = -3.3  for stack of 14-206
		Stack = -3.3  for stack of 15-205
	Helix total = -22.6
	Internal/bulge = 3.8  for closure of 16-204	Size = 5
		Stack = -3.3  for stack of 18-199
		Stack = -2.4  for stack of 19-198
		Stack = -2.1  for stack of 20-197
		Stack = -3.3  for stack of 21-196
		Stack = -3.4  for stack of 22-195
	Helix total = -14.5
	Internal/bulge = 5.9  for closure of 23-194	Size = 94
		Stack = -3.4  for stack of 60-135
		Stack = -3.3  for stack of 61-134
		Stack = -2.1  for stack of 62-133
		Stack = -1.3  for stack of 63-132
	Helix total = -10.1
	Internal/bulge = 7.1  for closure of 64-131	Size = 31
		Stack = -2.2  for stack of 91-125
		Stack = -3.3  for stack of 92-124
		Stack = -2.1  for stack of 93-123
		Stack = -2.4  for stack of 94-122
		Stack = -2.4  for stack of 95-121
		Stack = -3.4  for stack of 96-120
		Stack = -2.1  for stack of 97-119
		Stack = -2.1  for stack of 98-118
	Helix total = -20.0
	Hairpin = 5.5  for closure of 99-117


	Total energy = -136.2



