Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    102:188 103:187 104:186 105:185 106:184 107:183 108:181 109:180
	    110:179
	Energy of Broken Structure: -154.9
	Energy of Pseudo-Helices:   -16.1
	Pseudoknot Energy Penalty:  8.9
	Total Free Energy:          -162.1
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -3.9
		Stack = -2.4  for stack of 384-445
	Helix total = -2.4
	Internal/bulge = 1.2  for closure of 385-444	Size = 2
		Stack = -3.3  for stack of 387-442
		Stack = -2.4  for stack of 388-441
		Stack = -1.5  for stack of 389-440
		Stack = -2.5  for stack of 390-439
		Stack = -3.3  for stack of 391-438
		Stack = -3.3  for stack of 392-437
		Stack = -3.3  for stack of 393-436
	Helix total = -19.6
	Internal/bulge = 5.5  for closure of 394-435	Size = 10
		Stack = -2.2  for stack of 403-432
		Stack = -2.1  for stack of 404-431
		Stack = -3.4  for stack of 405-430
	Helix total = -7.7
	Internal/bulge = -0.1  for closure of 406-429	Size = 2
	Helix total = 0.0
	Internal/bulge = 0.8  for closure of 408-427	Size = 2
		Stack = -2.4  for stack of 410-425
		Stack = -3.3  for stack of 411-424
		Stack = -3.3  for stack of 412-423
	Helix total = -9.0
	Hairpin = 4.0  for closure of 413-422
		Stack = -3.3  for stack of 215-373
		Stack = -2.1  for stack of 216-372
		Stack = -2.1  for stack of 217-371
		Stack = -3.4  for stack of 218-370
		Stack = -2.4  for stack of 219-369
		Stack = -3.3  for stack of 220-368
	Helix total = -16.6
	Internal/bulge = 5.5  for closure of 221-367	Size = 18
		Stack = -3.4  for stack of 229-355
		Stack = -3.3  for stack of 230-354
	Helix total = -6.7
	Internal/bulge = 0.5  for closure of 231-353	Size = 1 BP stack across bulge = -3.3
	Helix total = 0.0
	Internal/bulge = 0.1  for closure of 232-351	Size = 1 BP stack across bulge = -2.4
		Stack = -3.4  for stack of 233-349
		Stack = -3.3  for stack of 234-348
		Stack = -3.3  for stack of 235-347
		Stack = -2.4  for stack of 236-346
	Helix total = -12.4
	Internal/bulge = 2.3  for closure of 237-345	Size = 4
		Stack = -3.3  for stack of 241-343
		Stack = -3.3  for stack of 242-342
	Helix total = -6.6
	Internal/bulge = 0.5  for closure of 243-341	Size = 2
		Stack = -2.4  for stack of 245-339
		Stack = -3.4  for stack of 246-338
	Helix total = -5.8
	Internal/bulge = 3.2  for closure of 247-337	Size = 6
		Stack = -3.3  for stack of 250-332
		Stack = -3.3  for stack of 251-331
		Stack = -2.4  for stack of 252-330
		Stack = -3.4  for stack of 253-329
	Helix total = -12.4
	Multiloop = 5.7  for closure of 254-328
		Stack = -2.1  for stack of 308-320
		Stack = -2.4  for stack of 309-319
		Stack = -2.1  for stack of 310-318
		Stack = -2.5  for stack of 311-317
	Helix total = -9.1
	Hairpin = 5.9  for closure of 312-316
	Helix total = 0.0
	Internal/bulge = -0.4  for closure of 262-306	Size = 2
		Stack = -2.4  for stack of 264-304
		Stack = -3.3  for stack of 265-303
	Helix total = -5.7
	Internal/bulge = -0.9  for closure of 266-302	Size = 1 BP stack across bulge = -3.4
		Stack = -2.4  for stack of 268-301
		Stack = -3.3  for stack of 269-300
		Stack = -3.4  for stack of 270-299
	Helix total = -9.1
	Internal/bulge = 2.6  for closure of 271-298	Size = 5
		Stack = -3.3  for stack of 274-294
		Stack = -3.3  for stack of 275-293
	Helix total = -6.6
	Hairpin = 4.7  for closure of 276-292
		Stack = -3.3  for stack of 11-212
		Stack = -2.1  for stack of 12-211
		Stack = -1.4  for stack of 13-210
		Stack = -3.3  for stack of 14-209
		Stack = -3.3  for stack of 15-208
		Stack = -2.4  for stack of 16-207
		Stack = -2.1  for stack of 17-206
		Stack = -3.3  for stack of 18-205
		Stack = -3.3  for stack of 19-204
		Stack = -3.3  for stack of 20-203
	Helix total = -27.8
	Internal/bulge = 0.5  for closure of 21-202	Size = 1 BP stack across bulge = -3.3
		Stack = -3.3  for stack of 22-200
		Stack = -1.5  for stack of 23-199
		Stack = -2.5  for stack of 24-198
		Stack = -2.1  for stack of 25-197
		Stack = -1.4  for stack of 26-196
		Stack = -3.3  for stack of 27-195
		Stack = -2.5  for stack of 28-194
		Stack = -1.5  for stack of 29-193
	Helix total = -18.1
	Internal/bulge = 6.7  for closure of 30-192	Size = 79
		Stack = -2.1  for stack of 58-139
		Stack = -2.1  for stack of 59-138
		Stack = -2.2  for stack of 60-137
		Stack = -1.3  for stack of 61-136
		Stack = -2.1  for stack of 62-135
		Stack = -1.5  for stack of 63-134
		Stack = -2.5  for stack of 64-133
	Helix total = -13.8
	Internal/bulge = 1.4  for closure of 65-132	Size = 9
		Stack = -3.4  for stack of 71-127
		Stack = -2.1  for stack of 72-126
		Stack = -0.9  for stack of 73-125
		Stack = -0.9  for stack of 74-124
	Helix total = -7.3
	Internal/bulge = 6.4  for closure of 75-123	Size = 12
		Stack = -2.4  for stack of 85-119
		Stack = -3.4  for stack of 86-118
	Helix total = -5.8
	Internal/bulge = -0.1  for closure of 87-117	Size = 2
		Stack = -2.4  for stack of 89-115
		Stack = -3.4  for stack of 90-114
		Stack = -2.1  for stack of 91-113
		Stack = -2.1  for stack of 92-112
	Helix total = -10.0
	Hairpin = 5.5  for closure of 93-111


	Total energy = -154.9



