Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    64:139 65:138 66:137 67:136 68:135 69:134 70:132 71:131
	Energy of Broken Structure: -103.5
	Energy of Pseudo-Helices:   -13.1
	Pseudoknot Energy Penalty:  9.0
	Total Free Energy:          -107.6
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -3.4
		Stack = -2.4  for stack of 314-374
		Stack = -0.6  for stack of 315-373
		Stack = -2.5  for stack of 316-372
		Stack = -2.1  for stack of 317-371
	Helix total = -7.6
	Internal/bulge = 4.1  for closure of 318-370	Size = 1 BP stack across bulge = 0.3
		Stack = -2.1  for stack of 319-368
		Stack = -2.2  for stack of 320-367
	Helix total = -4.3
	Internal/bulge = 1.2  for closure of 321-366	Size = 2
		Stack = -3.3  for stack of 323-364
	Helix total = -3.3
	Internal/bulge = 4.4  for closure of 324-363	Size = 9
		Stack = -2.2  for stack of 332-360
		Stack = -2.1  for stack of 333-359
	Helix total = -4.3
	Internal/bulge = 0.4  for closure of 334-358	Size = 1 BP stack across bulge = -3.4
	Helix total = 0.0
	Internal/bulge = 3.0  for closure of 336-357	Size = 4
		Stack = -2.4  for stack of 338-353
		Stack = -3.3  for stack of 339-352
		Stack = -3.3  for stack of 340-351
	Helix total = -9.0
	Hairpin = 3.4  for closure of 341-350
		Stack = -2.1  for stack of 162-303
		Stack = -0.9  for stack of 163-302
		Stack = -2.1  for stack of 164-301
		Stack = -3.4  for stack of 165-300
		Stack = -2.4  for stack of 166-299
		Stack = -3.3  for stack of 167-298
	Helix total = -14.2
	Internal/bulge = 5.5  for closure of 168-297	Size = 10
		Stack = -3.3  for stack of 171-288
	Helix total = -3.3
	Internal/bulge = 0.5  for closure of 172-287	Size = 2
	Helix total = 0.0
	Internal/bulge = 2.8  for closure of 174-285	Size = 2
		Stack = -3.4  for stack of 175-282
		Stack = -3.3  for stack of 176-281
		Stack = -3.3  for stack of 177-280
	Helix total = -10.0
	Internal/bulge = 0.9  for closure of 178-279	Size = 1 BP stack across bulge = -2.1
		Stack = -2.1  for stack of 179-277
		Stack = -3.4  for stack of 180-276
		Stack = -3.3  for stack of 181-275
		Stack = -3.3  for stack of 182-274
		Stack = -3.3  for stack of 183-273
	Helix total = -15.4
	Internal/bulge = 2.2  for closure of 184-272	Size = 9
		Stack = -3.3  for stack of 188-265
		Stack = -3.3  for stack of 189-264
		Stack = -2.4  for stack of 190-263
		Stack = -3.4  for stack of 191-262
	Helix total = -12.4
	Multiloop = 5.7  for closure of 192-261
		Stack = -2.1  for stack of 241-253
		Stack = -2.4  for stack of 242-252
		Stack = -2.1  for stack of 243-251
	Helix total = -6.6
	Hairpin = 4.6  for closure of 244-250
		Stack = -2.4  for stack of 200-239
		Stack = -3.4  for stack of 201-238
		Stack = -2.4  for stack of 202-237
		Stack = -3.3  for stack of 203-236
	Helix total = -11.5
	Internal/bulge = 0.4  for closure of 204-235	Size = 1 BP stack across bulge = -3.4
		Stack = -2.4  for stack of 206-234
		Stack = -3.3  for stack of 207-233
		Stack = -3.4  for stack of 208-232
	Helix total = -9.1
	Internal/bulge = 2.6  for closure of 209-231	Size = 5
		Stack = -3.3  for stack of 212-227
		Stack = -2.4  for stack of 213-226
	Helix total = -5.7
	Hairpin = 6.0  for closure of 214-225
		Stack = -3.4  for stack of 22-101
		Stack = -2.1  for stack of 23-100
		Stack = -2.1  for stack of 24-99
		Stack = -2.5  for stack of 25-98
		Stack = 0.3  for stack of 26-97
		Stack = -2.1  for stack of 27-96
		Stack = -3.3  for stack of 28-95
		Stack = -2.2  for stack of 29-94
	Helix total = -17.4
	Internal/bulge = 3.6  for closure of 30-93	Size = 9
		Stack = -2.5  for stack of 36-88
		Stack = -2.1  for stack of 37-87
		Stack = -0.9  for stack of 38-86
		Stack = -0.9  for stack of 39-85
	Helix total = -6.4
	Internal/bulge = 5.4  for closure of 40-84	Size = 8
		Stack = -2.4  for stack of 47-81
		Stack = -3.4  for stack of 48-80
		Stack = -3.3  for stack of 49-79
		Stack = -3.3  for stack of 50-78
		Stack = -2.4  for stack of 51-77
		Stack = -3.4  for stack of 52-76
		Stack = -2.1  for stack of 53-75
		Stack = -2.1  for stack of 54-74
	Helix total = -22.4
	Hairpin = 6.1  for closure of 55-73


	Total energy = -103.5



