Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    84:138 85:137 86:136 87:135 88:134 89:133 90:131 91:130
	    92:129
	Energy of Broken Structure: -87.2
	Energy of Pseudo-Helices:   -13.7
	Pseudoknot Energy Penalty:  8.5
	Total Free Energy:          -92.4
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -3.6
		Stack = -2.4  for stack of 334-397
		Stack = -2.1  for stack of 335-396
		Stack = -3.4  for stack of 336-395
		Stack = -3.3  for stack of 337-394
	Helix total = -11.2
	Internal/bulge = 2.4  for closure of 338-393	Size = 7
	Helix total = 0.0
	Internal/bulge = 6.7  for closure of 343-389	Size = 16
		Stack = -2.1  for stack of 355-383
		Stack = -1.0  for stack of 356-382
		Stack = -2.5  for stack of 357-381
	Helix total = -5.6
	Internal/bulge = 2.6  for closure of 358-380	Size = 5
		Stack = -2.1  for stack of 361-376
		Stack = -1.5  for stack of 362-375
		Stack = -3.3  for stack of 363-374
	Helix total = -6.9
	Hairpin = 3.4  for closure of 364-373
		Stack = -3.3  for stack of 163-322
		Stack = -3.3  for stack of 164-321
	Helix total = -6.6
	Internal/bulge = 0.9  for closure of 165-320	Size = 2
		Stack = -3.4  for stack of 167-318
		Stack = -2.1  for stack of 168-317
	Helix total = -5.5
	Internal/bulge = 7.0  for closure of 169-316	Size = 21
		Stack = -2.1  for stack of 184-308
		Stack = -2.1  for stack of 185-307
		Stack = -3.3  for stack of 186-306
		Stack = -1.5  for stack of 187-305
		Stack = 1.3  for stack of 188-304
		Stack = -0.5  for stack of 189-303
	Helix total = -8.2
	Internal/bulge = 6.6  for closure of 190-302	Size = 23
		Stack = -2.4  for stack of 204-291
	Helix total = -2.4
	Internal/bulge = -1.4  for closure of 205-290	Size = 2
		Stack = -3.4  for stack of 207-288
	Helix total = -3.4
	Internal/bulge = 0.5  for closure of 208-287	Size = 2
		Stack = -3.4  for stack of 210-285
		Stack = -2.1  for stack of 211-284
		Stack = -1.3  for stack of 212-283
		Stack = -1.5  for stack of 213-282
		Stack = -3.3  for stack of 214-281
	Helix total = -11.6
	Multiloop = 5.5  for closure of 215-280
		Stack = -2.1  for stack of 258-270
		Stack = -2.4  for stack of 259-269
		Stack = -2.1  for stack of 260-268
	Helix total = -6.6
	Hairpin = 4.1  for closure of 261-267
		Stack = -2.4  for stack of 227-256
		Stack = -3.4  for stack of 228-255
		Stack = -2.4  for stack of 229-254
		Stack = -1.5  for stack of 230-253
	Helix total = -9.7
	Internal/bulge = 1.3  for closure of 231-252	Size = 1 BP stack across bulge = -2.5
		Stack = -2.1  for stack of 233-251
		Stack = -1.3  for stack of 234-250
		Stack = -2.2  for stack of 235-249
	Helix total = -5.6
	Hairpin = 5.6  for closure of 236-248
		Stack = -2.2  for stack of 4-159
		Stack = -2.1  for stack of 5-158
		Stack = -3.3  for stack of 6-157
		Stack = -3.3  for stack of 7-156
		Stack = -2.4  for stack of 8-155
		Stack = -0.9  for stack of 9-154
		Stack = -1.4  for stack of 10-153
		Stack = -1.0  for stack of 11-152
		Stack = -2.1  for stack of 12-151
		Stack = -3.3  for stack of 13-150
		Stack = -2.4  for stack of 14-149
		Stack = -2.1  for stack of 15-148
		Stack = -3.3  for stack of 16-147
		Stack = -3.3  for stack of 17-146
	Helix total = -33.1
	Internal/bulge = 3.8  for closure of 18-145	Size = 72
		Stack = -3.4  for stack of 55-108
		Stack = -2.1  for stack of 56-107
		Stack = -2.4  for stack of 57-106
		Stack = -2.1  for stack of 58-105
	Helix total = -10.0
	Internal/bulge = 5.3  for closure of 59-104	Size = 9
		Stack = -2.4  for stack of 67-101
		Stack = -3.4  for stack of 68-100
		Stack = -2.1  for stack of 69-99
		Stack = -1.5  for stack of 70-98
		Stack = -2.4  for stack of 71-97
		Stack = -2.5  for stack of 72-96
		Stack = -0.6  for stack of 73-95
		Stack = -2.1  for stack of 74-94
	Helix total = -17.0
	Hairpin = 5.5  for closure of 75-93


	Total energy = -87.2



