Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    83:148 84:147 85:146 86:145 87:144 88:143 89:141 90:140
	    91:139
	Energy of Broken Structure: -146.7
	Energy of Pseudo-Helices:   -14.0
	Pseudoknot Energy Penalty:  8.7
	Total Free Energy:          -152.0
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -3.5
		Stack = -1.3  for stack of 362-426
		Stack = -2.1  for stack of 363-425
		Stack = -3.4  for stack of 364-424
		Stack = -2.4  for stack of 365-423
		Stack = -3.3  for stack of 366-422
		Stack = -3.4  for stack of 367-421
		Stack = -2.4  for stack of 368-420
		Stack = -2.5  for stack of 369-419
		Stack = -1.5  for stack of 370-418
	Helix total = -22.3
	Internal/bulge = 5.1  for closure of 371-417	Size = 15
		Stack = -3.3  for stack of 385-414
		Stack = -2.4  for stack of 386-413
		Stack = -3.4  for stack of 387-412
		Stack = -2.4  for stack of 388-411
		Stack = -3.4  for stack of 389-410
	Helix total = -14.9
	Internal/bulge = 0.8  for closure of 390-409	Size = 2
		Stack = -2.4  for stack of 392-407
		Stack = -3.3  for stack of 393-406
		Stack = -3.3  for stack of 394-405
	Helix total = -9.0
	Hairpin = 3.4  for closure of 395-404
		Stack = -2.1  for stack of 175-349
		Stack = -2.1  for stack of 176-348
		Stack = -3.3  for stack of 177-347
		Stack = -3.3  for stack of 178-346
		Stack = -3.3  for stack of 179-345
		Stack = -2.2  for stack of 180-344
	Helix total = -16.3
	Internal/bulge = 7.4  for closure of 181-343	Size = 29
		Stack = -3.3  for stack of 202-333
		Stack = -3.3  for stack of 203-332
		Stack = -3.3  for stack of 204-331
		Stack = -1.5  for stack of 205-330
		Stack = -2.5  for stack of 206-329
	Helix total = -13.9
	Internal/bulge = 0.6  for closure of 207-328	Size = 4
		Stack = -3.4  for stack of 210-325
		Stack = -3.3  for stack of 211-324
	Helix total = -6.7
	Internal/bulge = 1.2  for closure of 212-323	Size = 11
		Stack = -3.4  for stack of 219-317
		Stack = -2.1  for stack of 220-316
		Stack = -2.4  for stack of 221-315
		Stack = -3.3  for stack of 222-314
		Stack = -3.3  for stack of 223-313
		Stack = -2.1  for stack of 224-312
	Helix total = -16.6
	Internal/bulge = 5.1  for closure of 225-311	Size = 6
		Stack = -2.4  for stack of 227-305
		Stack = -3.4  for stack of 228-304
		Stack = -3.3  for stack of 229-303
		Stack = -2.4  for stack of 230-302
	Helix total = -11.5
	Multiloop = 6.8  for closure of 231-301
		Stack = -2.1  for stack of 280-292
		Stack = -2.4  for stack of 281-291
		Stack = -2.1  for stack of 282-290
	Helix total = -6.6
	Hairpin = 4.1  for closure of 283-289
		Stack = -2.4  for stack of 246-278
		Stack = -3.4  for stack of 247-277
		Stack = -2.4  for stack of 248-276
		Stack = -3.3  for stack of 249-275
	Helix total = -11.5
	Internal/bulge = 0.4  for closure of 250-274	Size = 1 BP stack across bulge = -3.4
		Stack = -2.4  for stack of 252-273
		Stack = -3.3  for stack of 253-272
		Stack = -3.4  for stack of 254-271
	Helix total = -9.1
	Internal/bulge = 2.3  for closure of 255-270	Size = 4
		Stack = -3.3  for stack of 257-266
		Stack = -2.5  for stack of 258-265
	Helix total = -5.8
	Hairpin = 5.3  for closure of 259-264
		Stack = -2.5  for stack of 4-173
		Stack = -1.4  for stack of 5-172
	Helix total = -3.9
	Internal/bulge = 3.6  for closure of 6-171	Size = 4
	Helix total = 0.0
	Internal/bulge = 0.5  for closure of 7-166	Size = 1 BP stack across bulge = -3.3
		Stack = -3.3  for stack of 9-165
	Helix total = -3.3
	Internal/bulge = 1.2  for closure of 10-164	Size = 2
		Stack = -2.1  for stack of 12-162
		Stack = -3.3  for stack of 13-161
		Stack = -3.3  for stack of 14-160
		Stack = -3.3  for stack of 15-159
		Stack = -2.4  for stack of 16-158
		Stack = -2.1  for stack of 17-157
		Stack = -1.5  for stack of 18-156
		Stack = -2.5  for stack of 19-155
		Stack = -2.1  for stack of 20-154
		Stack = -1.5  for stack of 21-153
	Helix total = -24.1
	Internal/bulge = 6.8  for closure of 22-152	Size = 58
		Stack = -3.3  for stack of 42-112
		Stack = -3.4  for stack of 43-111
	Helix total = -6.7
	Internal/bulge = 5.5  for closure of 44-110	Size = 10
		Stack = -3.4  for stack of 54-108
		Stack = -2.1  for stack of 55-107
		Stack = -2.4  for stack of 56-106
		Stack = -3.3  for stack of 57-105
	Helix total = -11.2
	Internal/bulge = 4.9  for closure of 58-104	Size = 10
		Stack = -2.4  for stack of 66-100
		Stack = -2.2  for stack of 67-99
		Stack = -2.4  for stack of 68-98
		Stack = -3.3  for stack of 69-97
		Stack = -2.4  for stack of 70-96
		Stack = -3.4  for stack of 71-95
		Stack = -2.1  for stack of 72-94
		Stack = -2.1  for stack of 73-93
	Helix total = -20.3
	Hairpin = 5.5  for closure of 74-92


	Total energy = -146.7



