Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    106:169 107:168 108:167 109:166 110:165 111:164 112:162 113:161
	    114:160
	Energy of Broken Structure: -104.2
	Energy of Pseudo-Helices:   -13.4
	Pseudoknot Energy Penalty:  8.8
	Total Free Energy:          -108.8
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -4.2
		Stack = -2.4  for stack of 438-500
		Stack = -2.1  for stack of 439-499
		Stack = -3.4  for stack of 440-498
		Stack = -3.3  for stack of 441-497
		Stack = -2.4  for stack of 442-496
	Helix total = -13.6
	Internal/bulge = 1.1  for closure of 443-495	Size = 3
		Stack = -3.4  for stack of 446-493
		Stack = -3.3  for stack of 447-492
		Stack = -3.3  for stack of 448-491
	Helix total = -10.0
	Internal/bulge = 5.5  for closure of 449-490	Size = 10
		Stack = -3.3  for stack of 458-487
		Stack = -3.3  for stack of 459-486
		Stack = -3.4  for stack of 460-485
		Stack = -1.4  for stack of 461-484
	Helix total = -11.4
	Internal/bulge = 3.7  for closure of 462-483	Size = 3
		Stack = -2.4  for stack of 464-480
		Stack = -3.3  for stack of 465-479
		Stack = -3.3  for stack of 466-478
	Helix total = -9.0
	Hairpin = 4.3  for closure of 467-477
		Stack = -2.1  for stack of 188-425
	Helix total = -2.1
	Internal/bulge = 1.3  for closure of 189-424	Size = 2
		Stack = -2.5  for stack of 191-422
		Stack = -1.4  for stack of 192-421
		Stack = -1.5  for stack of 193-420
	Helix total = -5.4
	Internal/bulge = 7.3  for closure of 194-419	Size = 75
		Stack = -3.3  for stack of 254-402
		Stack = -2.5  for stack of 255-401
		Stack = -1.5  for stack of 256-400
		Stack = -2.1  for stack of 257-399
	Helix total = -9.4
	Internal/bulge = 3.3  for closure of 258-398	Size = 2
	Helix total = 0.0
	Internal/bulge = 0.5  for closure of 259-395	Size = 2
		Stack = -3.4  for stack of 261-393
		Stack = -2.1  for stack of 262-392
	Helix total = -5.5
	Internal/bulge = 4.3  for closure of 263-391	Size = 22
		Stack = -3.3  for stack of 276-380
		Stack = -3.3  for stack of 277-379
		Stack = -1.4  for stack of 278-378
	Helix total = -8.0
	Internal/bulge = 3.9  for closure of 279-377	Size = 8
		Stack = -2.5  for stack of 283-371
		Stack = -3.3  for stack of 284-370
		Stack = -3.3  for stack of 285-369
	Helix total = -9.1
	Multiloop = 5.4  for closure of 286-368
		Stack = -2.1  for stack of 346-358
		Stack = -2.4  for stack of 347-357
		Stack = -2.1  for stack of 348-356
	Helix total = -6.6
	Hairpin = 5.2  for closure of 349-355
		Stack = -3.3  for stack of 297-344
		Stack = -3.4  for stack of 298-343
		Stack = -2.4  for stack of 299-342
		Stack = -3.3  for stack of 300-341
		Stack = -3.4  for stack of 301-340
		Stack = -3.3  for stack of 302-339
		Stack = -2.4  for stack of 303-338
		Stack = -2.5  for stack of 304-337
	Helix total = -24.0
	Internal/bulge = 2.7  for closure of 305-336	Size = 6
		Stack = -3.3  for stack of 309-332
		Stack = -3.3  for stack of 310-331
	Helix total = -6.6
	Hairpin = 4.9  for closure of 311-330
		Stack = -3.3  for stack of 22-185
		Stack = -3.3  for stack of 23-184
		Stack = -2.5  for stack of 24-183
		Stack = -1.5  for stack of 25-182
	Helix total = -10.6
	Internal/bulge = 1.0  for closure of 26-181	Size = 1 BP stack across bulge = -2.4
		Stack = -2.5  for stack of 28-180
		Stack = -1.5  for stack of 29-179
		Stack = -3.3  for stack of 30-178
		Stack = -2.4  for stack of 31-177
	Helix total = -9.7
	Internal/bulge = 0.5  for closure of 32-176	Size = 2
		Stack = -3.3  for stack of 34-174
		Stack = -2.1  for stack of 35-173
	Helix total = -5.4
	Internal/bulge = 5.0  for closure of 36-172	Size = 81
		Stack = -2.1  for stack of 77-130
		Stack = -2.4  for stack of 78-129
		Stack = -3.3  for stack of 79-128
	Helix total = -7.8
	Internal/bulge = 5.8  for closure of 80-127	Size = 13
		Stack = -3.4  for stack of 90-122
		Stack = -2.1  for stack of 91-121
		Stack = -1.5  for stack of 92-120
		Stack = -2.4  for stack of 93-119
		Stack = -3.4  for stack of 94-118
		Stack = -2.1  for stack of 95-117
		Stack = -2.1  for stack of 96-116
	Helix total = -17.0
	Hairpin = 5.5  for closure of 97-115


	Total energy = -104.2



