Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    63:139 64:138 65:137 66:136 67:135 68:134 69:132 70:131
	    71:130
	Energy of Broken Structure: -93.8
	Energy of Pseudo-Helices:   -14.0
	Pseudoknot Energy Penalty:  9.0
	Total Free Energy:          -98.8
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -3.2
		Stack = -2.4  for stack of 319-380
		Stack = -0.9  for stack of 320-379
		Stack = -2.2  for stack of 321-378
		Stack = -2.1  for stack of 322-377
	Helix total = -7.6
	Internal/bulge = 2.8  for closure of 323-376	Size = 1 BP stack across bulge = -1.0
		Stack = -2.1  for stack of 324-374
		Stack = -2.2  for stack of 325-373
	Helix total = -4.3
	Internal/bulge = 1.2  for closure of 326-372	Size = 2
		Stack = -3.3  for stack of 328-370
	Helix total = -3.3
	Internal/bulge = 4.9  for closure of 329-369	Size = 10
		Stack = -2.2  for stack of 338-366
		Stack = -2.1  for stack of 339-365
	Helix total = -4.3
	Internal/bulge = 2.3  for closure of 340-364	Size = 1 BP stack across bulge = -1.5
		Stack = -2.5  for stack of 341-362
	Helix total = -2.5
	Internal/bulge = 1.2  for closure of 342-361	Size = 2
		Stack = -1.3  for stack of 344-359
		Stack = -1.5  for stack of 345-358
		Stack = -3.3  for stack of 346-357
	Helix total = -6.1
	Hairpin = 3.4  for closure of 347-356
	Helix total = 0.0
	Internal/bulge = 2.4  for closure of 162-308	Size = 4
		Stack = -3.4  for stack of 165-305
		Stack = -2.4  for stack of 166-304
		Stack = -3.3  for stack of 167-303
	Helix total = -9.1
	Internal/bulge = 4.3  for closure of 168-302	Size = 14
		Stack = -3.3  for stack of 174-292
		Stack = -3.4  for stack of 175-291
		Stack = -3.3  for stack of 176-290
	Helix total = -10.0
	Internal/bulge = 3.3  for closure of 177-289	Size = 2
		Stack = -2.5  for stack of 178-286
		Stack = -3.3  for stack of 179-285
		Stack = -3.3  for stack of 180-284
	Helix total = -9.1
	Internal/bulge = 3.8  for closure of 181-283	Size = 5
		Stack = -3.4  for stack of 183-278
		Stack = -3.3  for stack of 184-277
		Stack = -3.3  for stack of 185-276
		Stack = -2.4  for stack of 186-275
		Stack = -3.3  for stack of 187-274
		Stack = -2.2  for stack of 188-273
	Helix total = -17.9
	Internal/bulge = 1.9  for closure of 189-272	Size = 3
		Stack = -3.3  for stack of 191-269
		Stack = -3.3  for stack of 192-268
		Stack = -2.4  for stack of 193-267
	Helix total = -9.0
	Multiloop = 5.9  for closure of 194-266
		Stack = -2.1  for stack of 245-257
		Stack = -2.4  for stack of 246-256
		Stack = -2.1  for stack of 247-255
	Helix total = -6.6
	Hairpin = 5.2  for closure of 248-254
		Stack = -1.4  for stack of 204-243
		Stack = -2.5  for stack of 205-242
		Stack = -2.4  for stack of 206-241
		Stack = -3.3  for stack of 207-240
	Helix total = -9.6
	Internal/bulge = 0.4  for closure of 208-239	Size = 1 BP stack across bulge = -3.4
		Stack = -2.4  for stack of 210-238
		Stack = -3.3  for stack of 211-237
		Stack = -3.4  for stack of 212-236
	Helix total = -9.1
	Internal/bulge = 2.6  for closure of 213-235	Size = 5
		Stack = -3.3  for stack of 216-231
		Stack = -1.5  for stack of 217-230
	Helix total = -4.8
	Hairpin = 3.8  for closure of 218-229
		Stack = -3.4  for stack of 20-101
		Stack = -2.1  for stack of 21-100
		Stack = -2.1  for stack of 22-99
		Stack = -2.5  for stack of 23-98
		Stack = 0.3  for stack of 24-97
		Stack = -2.1  for stack of 25-96
		Stack = -3.3  for stack of 26-95
		Stack = -2.2  for stack of 27-94
	Helix total = -17.4
	Internal/bulge = 3.3  for closure of 28-93	Size = 11
		Stack = -2.1  for stack of 35-87
		Stack = -0.9  for stack of 36-86
		Stack = -0.9  for stack of 37-85
	Helix total = -3.9
	Internal/bulge = 5.8  for closure of 38-84	Size = 12
		Stack = -3.4  for stack of 47-79
		Stack = -3.3  for stack of 48-78
		Stack = -3.3  for stack of 49-77
		Stack = -2.4  for stack of 50-76
		Stack = -3.4  for stack of 51-75
		Stack = -2.1  for stack of 52-74
		Stack = -2.1  for stack of 53-73
	Helix total = -20.0
	Hairpin = 5.5  for closure of 54-72


	Total energy = -93.8



