Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    108:185 109:184 110:183 111:180 112:179 113:178 114:176 115:175
	    116:174
	Energy of Broken Structure: -123.6
	Energy of Pseudo-Helices:   -10.4
	Pseudoknot Energy Penalty:  8.6
	Total Free Energy:          -125.4
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -4.8
		Stack = -2.4  for stack of 480-540
		Stack = -2.2  for stack of 481-539
		Stack = -3.3  for stack of 482-538
		Stack = -2.1  for stack of 483-537
		Stack = -2.1  for stack of 484-536
	Helix total = -12.1
	Internal/bulge = 0.5  for closure of 485-535	Size = 1 BP stack across bulge = -3.3
		Stack = -3.3  for stack of 487-534
		Stack = -3.4  for stack of 488-533
	Helix total = -6.7
	Internal/bulge = 6.0  for closure of 489-532	Size = 14
		Stack = -2.1  for stack of 499-526
		Stack = -3.4  for stack of 500-525
		Stack = -2.4  for stack of 501-524
	Helix total = -7.9
	Internal/bulge = 1.7  for closure of 502-523	Size = 4
		Stack = -2.4  for stack of 505-520
		Stack = -3.3  for stack of 506-519
		Stack = -3.3  for stack of 507-518
	Helix total = -9.0
	Hairpin = 4.0  for closure of 508-517
		Stack = -3.3  for stack of 230-463
		Stack = -2.1  for stack of 231-462
		Stack = -2.1  for stack of 232-461
		Stack = -3.4  for stack of 233-460
		Stack = -2.4  for stack of 234-459
		Stack = -3.3  for stack of 235-458
	Helix total = -16.6
	Internal/bulge = 6.4  for closure of 236-457	Size = 90
		Stack = -2.5  for stack of 284-413
		Stack = -1.5  for stack of 285-412
		Stack = -2.4  for stack of 286-411
		Stack = -3.3  for stack of 287-410
		Stack = -3.4  for stack of 288-409
		Stack = -3.3  for stack of 289-408
		Stack = -3.3  for stack of 290-407
		Stack = -3.3  for stack of 291-406
	Helix total = -23.0
	Internal/bulge = 4.6  for closure of 292-405	Size = 16
		Stack = -1.5  for stack of 303-398
		Stack = -2.5  for stack of 304-397
		Stack = -3.3  for stack of 305-396
		Stack = -3.3  for stack of 306-395
		Stack = -2.1  for stack of 307-394
		Stack = -2.1  for stack of 308-393
		Stack = -3.4  for stack of 309-392
		Stack = -3.3  for stack of 310-391
	Helix total = -21.5
	Multiloop = 5.3  for closure of 311-390
		Stack = -2.1  for stack of 369-381
		Stack = -2.4  for stack of 370-380
		Stack = -2.1  for stack of 371-379
		Stack = -2.5  for stack of 372-378
	Helix total = -9.1
	Hairpin = 5.9  for closure of 373-377
		Stack = -2.4  for stack of 321-367
		Stack = -3.4  for stack of 322-366
		Stack = -2.4  for stack of 323-365
		Stack = -2.4  for stack of 324-364
	Helix total = -10.6
	Internal/bulge = 1.6  for closure of 325-363	Size = 1 BP stack across bulge = -2.2
		Stack = -2.1  for stack of 327-362
		Stack = -2.1  for stack of 328-361
		Stack = -3.4  for stack of 329-360
	Helix total = -7.6
	Internal/bulge = 2.6  for closure of 330-359	Size = 5
		Stack = -3.3  for stack of 333-355
		Stack = -3.3  for stack of 334-354
	Helix total = -6.6
	Hairpin = 6.0  for closure of 335-353
		Stack = -2.1  for stack of 4-210
	Helix total = -2.1
	Internal/bulge = 3.0  for closure of 5-209	Size = 3
		Stack = -3.4  for stack of 8-207
		Stack = -2.1  for stack of 9-206
		Stack = -1.4  for stack of 10-205
		Stack = -3.4  for stack of 11-204
		Stack = -2.4  for stack of 12-203
	Helix total = -12.7
	Internal/bulge = 1.1  for closure of 13-202	Size = 3
	Helix total = 0.0
	Internal/bulge = 3.8  for closure of 16-200	Size = 5
		Stack = -3.3  for stack of 18-195
		Stack = -2.4  for stack of 19-194
		Stack = -2.1  for stack of 20-193
		Stack = -3.3  for stack of 21-192
		Stack = -3.4  for stack of 22-191
	Helix total = -14.5
	Internal/bulge = 5.8  for closure of 23-190	Size = 90
		Stack = -3.4  for stack of 60-135
		Stack = -3.3  for stack of 61-134
		Stack = -2.1  for stack of 62-133
		Stack = -0.9  for stack of 63-132
	Helix total = -9.7
	Internal/bulge = 7.1  for closure of 64-131	Size = 31
		Stack = -2.2  for stack of 91-125
		Stack = -3.3  for stack of 92-124
		Stack = -2.1  for stack of 93-123
		Stack = -2.4  for stack of 94-122
		Stack = -2.4  for stack of 95-121
		Stack = -3.4  for stack of 96-120
		Stack = -2.1  for stack of 97-119
		Stack = -2.1  for stack of 98-118
	Helix total = -20.0
	Hairpin = 5.5  for closure of 99-117


	Total energy = -123.6



