Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    93:148 94:147 95:146 96:145 97:144 98:143 99:141 100:140
	    101:139
	Energy of Broken Structure: -70.3
	Energy of Pseudo-Helices:   -14.0
	Pseudoknot Energy Penalty:  8.5
	Total Free Energy:          -75.8
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -1.6
		Stack = -2.4  for stack of 343-404
		Stack = -2.1  for stack of 344-403
		Stack = -3.4  for stack of 345-402
		Stack = -2.1  for stack of 346-401
		Stack = -1.4  for stack of 347-400
	Helix total = -11.4
	Internal/bulge = 2.3  for closure of 348-399	Size = 1 BP stack across bulge = -1.5
		Stack = 1.3  for stack of 350-398
		Stack = -0.6  for stack of 351-397
		Stack = -2.1  for stack of 352-396
	Helix total = -1.4
	Internal/bulge = 4.8  for closure of 353-395	Size = 14
		Stack = -2.1  for stack of 364-390
		Stack = -3.4  for stack of 365-389
	Helix total = -5.5
	Internal/bulge = 3.0  for closure of 366-388	Size = 5
		Stack = -0.9  for stack of 369-384
		Stack = -2.4  for stack of 370-383
		Stack = -3.3  for stack of 371-382
	Helix total = -6.6
	Hairpin = 3.4  for closure of 372-381
		Stack = -1.5  for stack of 173-331
		Stack = -2.1  for stack of 174-330
		Stack = -1.0  for stack of 175-329
		Stack = -2.5  for stack of 176-328
		Stack = -3.3  for stack of 177-327
		Stack = -2.1  for stack of 178-326
	Helix total = -12.5
	Internal/bulge = 7.3  for closure of 179-325	Size = 28
		Stack = -2.1  for stack of 191-307
		Stack = -2.4  for stack of 192-306
		Stack = -2.1  for stack of 193-305
		Stack = -1.3  for stack of 194-304
		Stack = -0.5  for stack of 195-303
		Stack = -1.0  for stack of 196-302
	Helix total = -9.4
	Internal/bulge = 5.2  for closure of 197-301	Size = 12
		Stack = -3.4  for stack of 202-292
		Stack = -2.4  for stack of 203-291
	Helix total = -5.8
	Internal/bulge = 1.2  for closure of 204-290	Size = 2
		Stack = -2.1  for stack of 206-288
		Stack = -3.4  for stack of 207-287
		Stack = -3.3  for stack of 208-286
		Stack = -3.3  for stack of 209-285
		Stack = -3.3  for stack of 210-284
	Helix total = -15.4
	Multiloop = 5.6  for closure of 211-283
		Stack = -2.1  for stack of 260-272
		Stack = -2.4  for stack of 261-271
		Stack = -2.1  for stack of 262-270
	Helix total = -6.6
	Hairpin = 4.1  for closure of 263-269
		Stack = -2.4  for stack of 224-258
		Stack = -3.4  for stack of 225-257
		Stack = -2.1  for stack of 226-256
		Stack = -0.6  for stack of 227-255
	Helix total = -8.5
	Internal/bulge = 1.3  for closure of 228-254	Size = 1 BP stack across bulge = -2.5
		Stack = -2.1  for stack of 230-253
		Stack = -2.1  for stack of 231-252
		Stack = -2.5  for stack of 232-251
	Helix total = -6.7
	Internal/bulge = 4.6  for closure of 233-250	Size = 6
		Stack = -1.0  for stack of 236-245
		Stack = -1.4  for stack of 237-244
	Helix total = -2.4
	Hairpin = 4.7  for closure of 238-243
		Stack = -0.9  for stack of 3-172
		Stack = -1.1  for stack of 4-171
	Helix total = -2.0
	Internal/bulge = 1.7  for closure of 5-170	Size = 2
		Stack = -2.1  for stack of 7-168
	Helix total = -2.1
	Internal/bulge = 0.3  for closure of 8-167	Size = 2
		Stack = -1.5  for stack of 10-165
		Stack = -2.1  for stack of 11-164
	Helix total = -3.6
	Internal/bulge = 2.3  for closure of 12-163	Size = 4
		Stack = -3.3  for stack of 16-161
		Stack = -2.4  for stack of 17-160
		Stack = -0.9  for stack of 18-159
		Stack = -2.1  for stack of 19-158
	Helix total = -8.7
	Internal/bulge = 1.0  for closure of 20-157	Size = 1 BP stack across bulge = -1.5
		Stack = 1.3  for stack of 21-155
		Stack = -0.6  for stack of 22-154
		Stack = -2.4  for stack of 23-153
		Stack = -3.3  for stack of 24-152
	Helix total = -5.0
	Internal/bulge = 6.5  for closure of 25-151	Size = 69
		Stack = -3.3  for stack of 63-118
		Stack = -2.1  for stack of 64-117
		Stack = -2.4  for stack of 65-116
		Stack = -2.1  for stack of 66-115
	Helix total = -9.9
	Internal/bulge = 7.0  for closure of 67-114	Size = 11
		Stack = -2.1  for stack of 76-110
		Stack = -3.4  for stack of 77-109
		Stack = -2.4  for stack of 78-108
		Stack = -2.5  for stack of 79-107
		Stack = -1.4  for stack of 80-106
		Stack = -2.5  for stack of 81-105
		Stack = -0.6  for stack of 82-104
		Stack = -2.1  for stack of 83-103
	Helix total = -17.0
	Hairpin = 5.5  for closure of 84-102


	Total energy = -70.3



