Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    105:192 106:191 107:190 108:189 109:188 110:187 111:185 112:184
	    113:183
	Energy of Broken Structure: -132.2
	Energy of Pseudo-Helices:   -14.0
	Pseudoknot Energy Penalty:  8.8
	Total Free Energy:          -137.4
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -5.7
		Stack = -2.4  for stack of 396-459
		Stack = -2.1  for stack of 397-458
		Stack = -3.4  for stack of 398-457
	Helix total = -7.9
	Internal/bulge = 1.8  for closure of 399-456	Size = 1 BP stack across bulge = -1.4
		Stack = -0.5  for stack of 400-454
		Stack = -2.1  for stack of 401-453
		Stack = -2.2  for stack of 402-452
		Stack = -2.4  for stack of 403-451
		Stack = -3.3  for stack of 404-450
		Stack = -3.3  for stack of 405-449
	Helix total = -13.8
	Internal/bulge = 5.6  for closure of 406-448	Size = 11
		Stack = -2.2  for stack of 416-445
		Stack = -2.1  for stack of 417-444
		Stack = -3.4  for stack of 418-443
		Stack = -1.4  for stack of 419-442
	Helix total = -9.1
	Internal/bulge = 2.8  for closure of 420-441	Size = 4
		Stack = -2.4  for stack of 423-438
		Stack = -3.3  for stack of 424-437
		Stack = -3.3  for stack of 425-436
	Helix total = -9.0
	Hairpin = 3.4  for closure of 426-435
		Stack = -3.3  for stack of 219-385
		Stack = -2.1  for stack of 220-384
		Stack = -2.1  for stack of 221-383
		Stack = -3.4  for stack of 222-382
		Stack = -2.4  for stack of 223-381
		Stack = -3.3  for stack of 224-380
	Helix total = -16.6
	Internal/bulge = 4.2  for closure of 225-379	Size = 26
		Stack = -2.5  for stack of 239-365
		Stack = -3.3  for stack of 240-364
	Helix total = -5.8
	Internal/bulge = 0.5  for closure of 241-363	Size = 1 BP stack across bulge = -3.3
	Helix total = 0.0
	Internal/bulge = 0.0  for closure of 242-361	Size = 2
		Stack = -2.1  for stack of 244-359
		Stack = -1.5  for stack of 245-358
	Helix total = -3.6
	Internal/bulge = 4.5  for closure of 246-357	Size = 5
		Stack = -1.5  for stack of 248-352
		Stack = -3.3  for stack of 249-351
		Stack = -3.3  for stack of 250-350
		Stack = -3.3  for stack of 251-349
		Stack = -3.3  for stack of 252-348
		Stack = -2.4  for stack of 253-347
	Helix total = -17.1
	Internal/bulge = 2.7  for closure of 254-346	Size = 7
		Stack = -3.3  for stack of 258-341
		Stack = -3.3  for stack of 259-340
		Stack = -2.4  for stack of 260-339
		Stack = -3.4  for stack of 261-338
	Helix total = -12.4
	Multiloop = 5.8  for closure of 262-337
		Stack = -2.1  for stack of 317-329
		Stack = -2.4  for stack of 318-328
		Stack = -2.1  for stack of 319-327
		Stack = -2.5  for stack of 320-326
	Helix total = -9.1
	Hairpin = 5.9  for closure of 321-325
		Stack = -2.4  for stack of 271-315
		Stack = -3.4  for stack of 272-314
		Stack = -2.4  for stack of 273-313
		Stack = -3.3  for stack of 274-312
	Helix total = -11.5
	Internal/bulge = 0.4  for closure of 275-311	Size = 1 BP stack across bulge = -3.4
		Stack = -2.4  for stack of 277-310
		Stack = -3.3  for stack of 278-309
		Stack = -3.4  for stack of 279-308
	Helix total = -9.1
	Internal/bulge = 2.6  for closure of 280-307	Size = 5
		Stack = -3.3  for stack of 283-303
		Stack = -3.3  for stack of 284-302
	Helix total = -6.6
	Hairpin = 4.7  for closure of 285-301
		Stack = -3.3  for stack of 17-217
		Stack = -3.3  for stack of 18-216
		Stack = -2.4  for stack of 19-215
		Stack = -3.3  for stack of 20-214
		Stack = -3.3  for stack of 21-213
		Stack = -2.4  for stack of 22-212
	Helix total = -18.0
	Internal/bulge = 1.2  for closure of 23-211	Size = 2
		Stack = -1.5  for stack of 25-209
		Stack = -2.1  for stack of 26-208
		Stack = -3.4  for stack of 27-207
		Stack = -2.4  for stack of 28-206
	Helix total = -9.4
	Internal/bulge = 3.8  for closure of 29-205	Size = 5
		Stack = -1.5  for stack of 31-200
	Helix total = -1.5
	Internal/bulge = 1.2  for closure of 32-199	Size = 2
	Helix total = 0.0
	Internal/bulge = 7.7  for closure of 34-197	Size = 78
		Stack = -3.3  for stack of 62-145
		Stack = -3.4  for stack of 63-144
		Stack = -2.4  for stack of 64-143
	Helix total = -9.1
	Internal/bulge = 1.6  for closure of 65-142	Size = 1 BP stack across bulge = -2.2
		Stack = -1.3  for stack of 66-140
		Stack = -2.1  for stack of 67-139
		Stack = -3.3  for stack of 68-138
		Stack = -3.4  for stack of 69-137
	Helix total = -10.1
	Internal/bulge = 2.2  for closure of 70-136	Size = 11
		Stack = -3.4  for stack of 76-129
		Stack = -2.1  for stack of 77-128
		Stack = -0.9  for stack of 78-127
		Stack = -0.9  for stack of 79-126
	Helix total = -7.3
	Internal/bulge = 6.1  for closure of 80-125	Size = 9
		Stack = -2.4  for stack of 88-122
	Helix total = -2.4
	Internal/bulge = 1.2  for closure of 89-121	Size = 2
		Stack = -2.5  for stack of 91-119
		Stack = -2.4  for stack of 92-118
		Stack = -3.4  for stack of 93-117
		Stack = -2.1  for stack of 94-116
		Stack = -2.1  for stack of 95-115
	Helix total = -12.5
	Hairpin = 5.5  for closure of 96-114


	Total energy = -132.2



