Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    91:151 92:150 93:149 94:148 95:147 96:146 97:144 98:143
	    99:142
	Energy of Broken Structure: -119.1
	Energy of Pseudo-Helices:   -11.7
	Pseudoknot Energy Penalty:  8.6
	Total Free Energy:          -122.2
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -5.0
		Stack = -2.4  for stack of 373-435
		Stack = -0.9  for stack of 374-434
		Stack = -2.2  for stack of 375-433
		Stack = -2.1  for stack of 376-432
		Stack = -1.3  for stack of 377-431
		Stack = -2.1  for stack of 378-430
	Helix total = -11.0
	Internal/bulge = 0.5  for closure of 379-429	Size = 1 BP stack across bulge = -3.3
		Stack = -2.5  for stack of 380-427
		Stack = 0.3  for stack of 381-426
		Stack = -2.5  for stack of 382-425
	Helix total = -4.7
	Internal/bulge = 6.4  for closure of 383-424	Size = 12
		Stack = -2.4  for stack of 393-420
		Stack = -2.4  for stack of 394-419
		Stack = -2.5  for stack of 395-418
		Stack = 0.3  for stack of 396-417
	Helix total = -7.0
	Internal/bulge = 3.8  for closure of 397-416	Size = 2
		Stack = -0.9  for stack of 398-413
		Stack = -2.4  for stack of 399-412
		Stack = -3.3  for stack of 400-411
	Helix total = -6.6
	Hairpin = 3.4  for closure of 401-410
		Stack = -3.3  for stack of 176-358
		Stack = -3.3  for stack of 177-357
		Stack = -2.4  for stack of 178-356
		Stack = -2.5  for stack of 179-355
		Stack = -1.4  for stack of 180-354
		Stack = -3.4  for stack of 181-353
	Helix total = -16.3
	Internal/bulge = 7.1  for closure of 182-352	Size = 23
		Stack = 0.3  for stack of 199-344
		Stack = -0.5  for stack of 200-343
		Stack = -2.1  for stack of 201-342
		Stack = -3.4  for stack of 202-341
		Stack = -3.3  for stack of 203-340
		Stack = -3.3  for stack of 204-339
		Stack = -2.4  for stack of 205-338
		Stack = -2.5  for stack of 206-337
		Stack = -0.5  for stack of 207-336
		Stack = 0.3  for stack of 208-335
		Stack = -0.5  for stack of 209-334
	Helix total = -17.9
	Internal/bulge = 5.2  for closure of 210-333	Size = 20
		Stack = -3.3  for stack of 222-323
		Stack = -3.4  for stack of 223-322
		Stack = -3.3  for stack of 224-321
	Helix total = -10.0
	Internal/bulge = 1.5  for closure of 225-320	Size = 3
		Stack = -3.3  for stack of 228-318
		Stack = -2.1  for stack of 229-317
		Stack = -2.4  for stack of 230-316
		Stack = -1.4  for stack of 231-315
	Helix total = -9.2
	Multiloop = 6.9  for closure of 232-314
		Stack = -2.1  for stack of 293-305
		Stack = -2.4  for stack of 294-304
		Stack = -2.1  for stack of 295-303
	Helix total = -6.6
	Hairpin = 4.1  for closure of 296-302
		Stack = -2.4  for stack of 243-291
		Stack = -3.4  for stack of 244-290
		Stack = -2.4  for stack of 245-289
		Stack = -3.3  for stack of 246-288
	Helix total = -11.5
	Internal/bulge = 0.4  for closure of 247-287	Size = 1 BP stack across bulge = -3.4
		Stack = -2.1  for stack of 249-286
		Stack = -2.1  for stack of 250-285
		Stack = -2.5  for stack of 251-284
	Helix total = -6.7
	Internal/bulge = 3.3  for closure of 252-283	Size = 5
		Stack = -3.3  for stack of 255-279
		Stack = -1.5  for stack of 256-278
	Helix total = -4.8
	Hairpin = 4.9  for closure of 257-277
		Stack = -2.1  for stack of 4-175
		Stack = -1.1  for stack of 5-174
		Stack = -0.9  for stack of 6-173
		Stack = -2.4  for stack of 7-172
	Helix total = -6.5
	Internal/bulge = 0.5  for closure of 8-171	Size = 2
		Stack = -3.3  for stack of 10-169
		Stack = -2.4  for stack of 11-168
		Stack = -0.6  for stack of 12-167
		Stack = -1.3  for stack of 13-166
		Stack = -2.1  for stack of 14-165
		Stack = -3.3  for stack of 15-164
		Stack = -3.3  for stack of 16-163
		Stack = -3.3  for stack of 17-162
		Stack = -3.4  for stack of 18-161
		Stack = -2.4  for stack of 19-160
		Stack = -2.2  for stack of 20-159
		Stack = -0.9  for stack of 21-158
		Stack = -1.3  for stack of 22-157
		Stack = -0.5  for stack of 23-156
		Stack = -1.5  for stack of 24-155
	Helix total = -31.8
	Internal/bulge = 5.4  for closure of 25-154	Size = 75
		Stack = -3.4  for stack of 62-114
		Stack = -2.1  for stack of 63-113
		Stack = -1.5  for stack of 64-112
		Stack = -2.1  for stack of 65-111
	Helix total = -9.1
	Internal/bulge = 6.7  for closure of 66-110	Size = 8
		Stack = -2.1  for stack of 74-108
		Stack = -3.4  for stack of 75-107
		Stack = -2.1  for stack of 76-106
		Stack = -2.4  for stack of 77-105
		Stack = -2.4  for stack of 78-104
		Stack = -3.4  for stack of 79-103
		Stack = -2.1  for stack of 80-102
		Stack = -2.1  for stack of 81-101
	Helix total = -20.0
	Hairpin = 5.5  for closure of 82-100


	Total energy = -119.1



