Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    75:151 76:150 77:149 78:148 79:147 80:146 81:144 82:143
	    83:142
	Energy of Broken Structure: -106.8
	Energy of Pseudo-Helices:   -16.1
	Pseudoknot Energy Penalty:  9.0
	Total Free Energy:          -113.9
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -3.7
		Stack = -2.4  for stack of 332-391
		Stack = -2.1  for stack of 333-390
		Stack = -3.4  for stack of 334-389
		Stack = -2.1  for stack of 335-388
	Helix total = -10.0
	Internal/bulge = 4.1  for closure of 336-387	Size = 1 BP stack across bulge = 0.3
		Stack = -2.1  for stack of 337-385
		Stack = -2.5  for stack of 338-384
	Helix total = -4.6
	Internal/bulge = 1.2  for closure of 339-383	Size = 2
		Stack = -2.1  for stack of 341-381
	Helix total = -2.1
	Internal/bulge = 5.4  for closure of 342-380	Size = 8
		Stack = -2.2  for stack of 349-377
		Stack = -2.1  for stack of 350-376
	Helix total = -4.3
	Internal/bulge = 2.3  for closure of 351-375	Size = 1 BP stack across bulge = -1.5
		Stack = -2.5  for stack of 352-373
		Stack = -2.1  for stack of 353-372
		Stack = -0.9  for stack of 354-371
		Stack = -2.4  for stack of 355-370
		Stack = -3.3  for stack of 356-369
	Helix total = -11.2
	Hairpin = 5.5  for closure of 357-368
		Stack = -2.1  for stack of 174-321
		Stack = -0.9  for stack of 175-320
		Stack = -2.1  for stack of 176-319
		Stack = -3.4  for stack of 177-318
		Stack = -2.4  for stack of 178-317
		Stack = -1.5  for stack of 179-316
	Helix total = -12.4
	Internal/bulge = 6.0  for closure of 180-315	Size = 14
		Stack = -3.3  for stack of 186-305
		Stack = -3.4  for stack of 187-304
		Stack = -3.3  for stack of 188-303
	Helix total = -10.0
	Internal/bulge = 2.8  for closure of 189-302	Size = 2
		Stack = -3.4  for stack of 190-299
		Stack = -3.3  for stack of 191-298
		Stack = -3.3  for stack of 192-297
	Helix total = -10.0
	Internal/bulge = 0.9  for closure of 193-296	Size = 1 BP stack across bulge = -2.1
		Stack = -2.1  for stack of 194-294
		Stack = -3.4  for stack of 195-293
		Stack = -3.3  for stack of 196-292
		Stack = -3.3  for stack of 197-291
		Stack = -3.3  for stack of 198-290
	Helix total = -15.4
	Internal/bulge = 3.4  for closure of 199-289	Size = 11
		Stack = -3.3  for stack of 204-281
		Stack = -2.4  for stack of 205-280
		Stack = -3.4  for stack of 206-279
	Helix total = -9.1
	Multiloop = 5.8  for closure of 207-278
		Stack = -2.1  for stack of 258-270
		Stack = -2.4  for stack of 259-269
		Stack = -2.1  for stack of 260-268
	Helix total = -6.6
	Hairpin = 4.1  for closure of 261-267
		Stack = -2.4  for stack of 216-256
		Stack = -3.4  for stack of 217-255
		Stack = -2.4  for stack of 218-254
		Stack = -3.3  for stack of 219-253
	Helix total = -11.5
	Internal/bulge = 0.9  for closure of 220-252	Size = 1 BP stack across bulge = -2.5
		Stack = -1.4  for stack of 222-251
		Stack = -3.3  for stack of 223-250
		Stack = -3.4  for stack of 224-249
	Helix total = -8.1
	Internal/bulge = 2.6  for closure of 225-248	Size = 5
		Stack = -3.3  for stack of 228-244
		Stack = -2.4  for stack of 229-243
	Helix total = -5.7
	Hairpin = 6.1  for closure of 230-242
		Stack = -2.4  for stack of 1-163
		Stack = -2.2  for stack of 2-162
		Stack = -2.4  for stack of 3-161
		Stack = -3.4  for stack of 4-160
		Stack = -2.4  for stack of 5-159
		Stack = -3.4  for stack of 6-158
	Helix total = -16.2
	Internal/bulge = 6.5  for closure of 7-157	Size = 68
		Stack = -3.4  for stack of 33-113
		Stack = -2.1  for stack of 34-112
		Stack = -2.1  for stack of 35-111
	Helix total = -7.6
	Internal/bulge = 2.2  for closure of 36-110	Size = 3
		Stack = -2.1  for stack of 38-107
		Stack = -3.3  for stack of 39-106
		Stack = -2.2  for stack of 40-105
	Helix total = -7.6
	Internal/bulge = 2.3  for closure of 41-104	Size = 11
		Stack = -2.1  for stack of 48-98
		Stack = -0.9  for stack of 49-97
		Stack = -0.9  for stack of 50-96
	Helix total = -3.9
	Internal/bulge = 5.6  for closure of 51-95	Size = 10
		Stack = -3.4  for stack of 59-91
		Stack = -3.3  for stack of 60-90
		Stack = -3.3  for stack of 61-89
		Stack = -2.4  for stack of 62-88
		Stack = -3.4  for stack of 63-87
		Stack = -2.1  for stack of 64-86
		Stack = -2.1  for stack of 65-85
	Helix total = -20.0
	Hairpin = 5.5  for closure of 66-84


	Total energy = -106.8



