Pseudoknot Energy Details for Structure 1:
	Knotted Pairs:
	    93:215 94:214 95:213 96:212 97:211 98:210 99:208 100:207
	    101:206
	Energy of Broken Structure: -119.5
	Energy of Pseudo-Helices:   -14.0
	Pseudoknot Energy Penalty:  9.1
	Total Free Energy:          -124.4
Details follow for Broken (Pseudoknot-free) Structure.
Thermodynamic details for structure # 1
	Exterior loop = -1.8
		Stack = -2.4  for stack of 374-438
		Stack = -2.1  for stack of 375-437
		Stack = -3.4  for stack of 376-436
		Stack = -2.4  for stack of 377-435
		Stack = -1.5  for stack of 378-434
		Stack = -2.5  for stack of 379-433
		Stack = -2.4  for stack of 380-432
		Stack = -3.4  for stack of 381-431
		Stack = -3.3  for stack of 382-430
	Helix total = -23.4
	Internal/bulge = 5.9  for closure of 383-429	Size = 15
		Stack = -3.3  for stack of 397-426
		Stack = -2.4  for stack of 398-425
		Stack = -3.4  for stack of 399-424
		Stack = -2.4  for stack of 400-423
		Stack = -3.4  for stack of 401-422
	Helix total = -14.9
	Internal/bulge = 0.5  for closure of 402-421	Size = 2
		Stack = -3.3  for stack of 404-419
		Stack = -3.3  for stack of 405-418
		Stack = -3.3  for stack of 406-417
	Helix total = -9.9
	Hairpin = 3.4  for closure of 407-416
		Stack = -2.1  for stack of 242-360
		Stack = -2.1  for stack of 243-359
		Stack = -3.3  for stack of 244-358
		Stack = -3.3  for stack of 245-357
		Stack = -3.3  for stack of 246-356
	Helix total = -14.1
	Internal/bulge = 6.5  for closure of 247-355	Size = 25
		Stack = -2.1  for stack of 250-331
		Stack = -1.5  for stack of 251-330
		Stack = -2.4  for stack of 252-329
	Helix total = -6.0
	Internal/bulge = 3.2  for closure of 253-328	Size = 3
		Stack = -3.3  for stack of 254-324
		Stack = -3.3  for stack of 255-323
		Stack = -2.4  for stack of 256-322
		Stack = -3.4  for stack of 257-321
	Helix total = -12.4
	Multiloop = 5.1  for closure of 258-320
		Stack = -2.1  for stack of 297-309
		Stack = -2.4  for stack of 298-308
		Stack = -2.1  for stack of 299-307
	Helix total = -6.6
	Hairpin = 4.7  for closure of 300-306
		Stack = -2.4  for stack of 263-295
		Stack = -3.4  for stack of 264-294
		Stack = -2.4  for stack of 265-293
		Stack = -3.3  for stack of 266-292
	Helix total = -11.5
	Internal/bulge = 0.4  for closure of 267-291	Size = 1 BP stack across bulge = -3.4
		Stack = -2.4  for stack of 269-290
		Stack = -3.3  for stack of 270-289
		Stack = -3.4  for stack of 271-288
	Helix total = -9.1
	Internal/bulge = 2.3  for closure of 272-287	Size = 4
		Stack = -3.3  for stack of 274-283
		Stack = -3.4  for stack of 275-282
	Helix total = -6.7
	Hairpin = 4.1  for closure of 276-281
		Stack = -1.4  for stack of 5-236
		Stack = -2.1  for stack of 6-235
		Stack = -3.3  for stack of 7-234
	Helix total = -6.8
	Internal/bulge = 0.5  for closure of 8-233	Size = 1 BP stack across bulge = -3.3
		Stack = -3.3  for stack of 10-232
		Stack = -3.3  for stack of 11-231
		Stack = -2.5  for stack of 12-230
		Stack = -1.4  for stack of 13-229
		Stack = -1.5  for stack of 14-228
	Helix total = -12.0
	Internal/bulge = 3.3  for closure of 15-227	Size = 5
		Stack = -1.5  for stack of 18-223
		Stack = -2.5  for stack of 19-222
		Stack = -2.1  for stack of 20-221
		Stack = -1.5  for stack of 21-220
	Helix total = -7.6
	Internal/bulge = 7.2  for closure of 22-219	Size = 128
		Stack = -2.1  for stack of 59-126
		Stack = -2.1  for stack of 60-125
	Helix total = -4.2
	Internal/bulge = 3.9  for closure of 61-124	Size = 12
		Stack = -3.4  for stack of 69-118
		Stack = -2.1  for stack of 70-117
		Stack = -2.4  for stack of 71-116
		Stack = -3.3  for stack of 72-115
	Helix total = -11.2
	Internal/bulge = 2.3  for closure of 73-114	Size = 8
		Stack = -3.4  for stack of 78-109
		Stack = -3.3  for stack of 79-108
		Stack = -3.3  for stack of 80-107
		Stack = -2.4  for stack of 81-106
		Stack = -3.4  for stack of 82-105
		Stack = -2.1  for stack of 83-104
		Stack = -2.1  for stack of 84-103
	Helix total = -20.0
	Hairpin = 5.4  for closure of 85-102


	Total energy = -119.5



